View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1097_low_1 (Length: 605)
Name: NF1097_low_1
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1097_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 157 - 593
Target Start/End: Complemental strand, 18917536 - 18917098
Alignment:
| Q |
157 |
caaaaaatagttagcaacattgtgcgtgctctatcagattttgtggaaatagaatcacaagataaagttcagttgagtgtctctgcagatacagatattg |
256 |
Q |
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| T |
18917536 |
caaaaaatagttagcaacattgtgcgtgctctatcagattttgtggaaatagaatcacaagataaagttcagttgagtgtctctgcagatacagatattg |
18917437 |
T |
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| Q |
257 |
gaaccatttactctgttacagtgcctgtacggcgggttaaaccagaatatcaagtggtggatgaaactgggacaataacaaatattgagtataaggacac |
356 |
Q |
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| T |
18917436 |
gaaccatttactctgttacagtgcccgtacggcgggttaaaccagaatatcaagtggtggatgaaactgggacaataacaaatattgagtataaggacac |
18917337 |
T |
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| Q |
357 |
cggagatatttcaggttctgttgatgttagatttgatttctatgttccggatgaaacgtcttgattttgaaataaaaggtcttgaatgttgacttctttg |
456 |
Q |
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| T |
18917336 |
cggagatatttcaggttctgttgatgttagatttgatttctatgttcaggatgaaacgtcttgattttgaaataaaaggtcttgaatgttgacttctttg |
18917237 |
T |
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| Q |
457 |
ccagaaggcagtgtttgaaaccctt-ccgatgaagccaatttggagtgctgtatatatatttgcaaattgaagcttccgttagggtgggtgactcga-tt |
554 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18917236 |
ccagaaggcagtgtttgaaacccttaccgatgaagccaatttggagtgctgtatatatatttgcaaattgaagcttccgttagggtgggtgactcgattt |
18917137 |
T |
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| Q |
555 |
taatgagaaattttgtaacaccttttatctgttagtctg |
593 |
Q |
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| T |
18917136 |
taatgagaaattttgtaacaccttttatctgttagtctg |
18917098 |
T |
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