View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1097_low_12 (Length: 309)
Name: NF1097_low_12
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1097_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 28665749 - 28666019
Alignment:
| Q |
7 |
gttaaatgggtggttaaggtgaaatttagattaaagatggatcaattgctaagtagaatccaaaactagtggcaaatagctatctagaaagggctggtta |
106 |
Q |
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| T |
28665749 |
gttaaatgggtgtttaaggtgaaatttagattaaaaatggatcaattgctaagtagaatccaaaactagtggcaaatagctatctagaaagggctggtta |
28665848 |
T |
|
| Q |
107 |
atttggactactaagaggtttctgcatcagtggtaaagcttgagacagtgagattggtagtagcacttacaagtctaagttgtgatcaaattaacaaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28665849 |
atttggactactaagaggtttctgcatcagtggtaaagcttgagacagtgagattggtagtagcacttacaagtctaagttgtgatcaaattaacaaagg |
28665948 |
T |
|
| Q |
207 |
tagcttataagttaacaaaggtagattagaagtctaaggagagatgagatgagaattaaggaggtgtgttgttagagtgattcaagttctgt |
298 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28665949 |
---------------------tagattagaagcctaaggagagatgagatgagaattaaggaggtgtgttgttagagtgattcaagttctgt |
28666019 |
T |
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