View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1097_low_15 (Length: 251)

Name: NF1097_low_15
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1097_low_15
NF1097_low_15
[»] chr5 (18 HSPs)
chr5 (1-235)||(30436335-30436569)
chr5 (1-235)||(30712778-30713012)
chr5 (1-235)||(30676638-30676875)
chr5 (1-235)||(30337875-30338112)
chr5 (1-235)||(30483920-30484157)
chr5 (4-235)||(29853830-29854064)
chr5 (4-235)||(29872693-29872927)
chr5 (1-235)||(30400593-30400830)
chr5 (1-233)||(30241731-30241966)
chr5 (13-234)||(30207042-30207266)
chr5 (5-235)||(30750162-30750398)
chr5 (5-235)||(30060888-30061124)
chr5 (15-153)||(17417957-17418095)
chr5 (34-157)||(30521008-30521131)
chr5 (34-157)||(30561348-30561471)
chr5 (1-153)||(30475979-30476131)
chr5 (4-153)||(17983502-17983651)
chr5 (1-83)||(30330529-30330611)
[»] chr7 (1 HSPs)
chr7 (1-235)||(26707851-26708088)
[»] chr4 (3 HSPs)
chr4 (1-235)||(20295932-20296169)
chr4 (1-153)||(52352563-52352715)
chr4 (10-152)||(13617200-13617342)
[»] chr1 (1 HSPs)
chr1 (1-234)||(7581069-7581305)
[»] chr3 (1 HSPs)
chr3 (1-167)||(25293297-25293457)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30436569 - 30436335
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  30436569 aaatctgttttgtcgtgtggatcaaaaggtagttccattttagtgtccactcgtgatgaggatgttgcaacaatcatgggaacatgggaaactcaccgtt 30436470  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttacaaagagcatacaaagtttgtggaaattggaaaggagat 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30436469 tgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacgttacaaagagcatacaaagtttgtggaaattggaaaggagat 30436370  T
Q  201 agtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    |||||||||||||||||||||||||||||||||||    
T  30436369 agtaaagaaatgtaatggattgcctcttgcagcaa 30436335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30712778 - 30713012
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  30712778 aaatctgttttgtcgtgtggatcaaaaggtagttccattttattgtccacccgtgatgaggttgttgcaactatcatgggaacatgggaaactcaccgtt 30712877  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttacaaagagcatacaaagtttgtggaaattggaaaggagat 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  30712878 tgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacgttacaaagagcatacaaagtttgtggaaataggaaaggagat 30712977  T
Q  201 agtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    || ||||||||||||||||||||| ||||||||||    
T  30712978 agcaaagaaatgtaatggattgccacttgcagcaa 30713012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30676638 - 30676875
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||| ||||||||    
T  30676638 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatgttgcatcaatcatggggacatgggaaagtcaccgtt 30676737  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| |||   ||||| |||||||| |||||||||||||||||||    
T  30676738 tgtctagtctctctgatagtgattgttggttgttgttcaaacaacatgcatttaaacgtaacaaagaagaggatacaaagcttgtggaaattggaaagga 30676837  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30676838 gatagtaaagaaatgtaatggattgcctcttgcagcaa 30676875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30337875 - 30338112
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||| ||||||||    
T  30337875 aaatctgttttgtcgtgtggatcaaaaggtagttccattttagtgtccactcgtgatgaggatgttgcatcaatcatggggacatgggaaagtcaccgtt 30337974  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||  |||| |||   ||||| |||||||| |||||||||||||||||||    
T  30337975 tgtctggtctctctgatagtgattgttggttgttgttcaaacaacatgcatttaaacgtaacaaagaagaggatacaaagcttgtggaaattggaaagga 30338074  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30338075 gatagtaaagaaatgtaatggattgcctcttgcagcaa 30338112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30484157 - 30483920
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||||||    
T  30484157 aaatctgttttgtcgtgtggatcaaaaggtagttccattttagtgtccactcgtgatgaggatgttgcaacaatcatggggacatgggaaagtcaccgtt 30484058  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    | ||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||   |||||||||||||| ||||||| |||||||||||    
T  30484057 tatctggtctctcagatagtgattgttggttgttgttcaaacaacatgcatttagacgtaacaaagaagagcatacaaagcttgtggagattggaaagga 30483958  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30483957 gatagtaaagaaatgtaatggattgcctcttgcagcaa 30483920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 29854064 - 29853830
Alignment:
Q  4 tctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgt 103  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |   | ||||||| ||||||||||||||  || |||||  |||||    
T  29854064 tctgtgttgtcgtgtggatcaaaaggtagttccattttagtgtccactcgtgataaatttgttgcaacaatcatgggaacatgccaagctcactctttgt 29853965  T
Q  104 ctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaaggagat 200  Q
     | |||||||||||||||| |||||||||||||||||| || |||||||| ||  || ||   |||||||||||||| |||||||||| |||||||||||    
T  29853964 atggtctctctgatagtgaatgttggttgttgttcaaagaatatgcatttggatatttcagagaagagcatacaaagcttgtggaaataggaaaggagat 29853865  T
Q  201 agtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
     ||||||||||||||||||||||||||||||||||    
T  29853864 tgtaaagaaatgtaatggattgcctcttgcagcaa 29853830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 29872927 - 29872693
Alignment:
Q  4 tctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgt 103  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | | | ||||||| ||| ||||||||||  || |||||  |||||    
T  29872927 tctgtgttgtcgtgtggatcaaaaggtagttccattttagtgtccacccgtgataaagttgttgcaacaatcgtgggaacatgccaagctcactctttgt 29872828  T
Q  104 ctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaaggagat 200  Q
    || || ||||||||||||| |||||||||||||||||| || |||||||| ||  |||||   |||||||||||||| || ||||||| |||||||||||    
T  29872827 ctggtatctctgatagtgaatgttggttgttgttcaaagaatatgcatttggatattacagagaagagcatacaaagcttatggaaataggaaaggagat 29872728  T
Q  201 agtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
     ||||||||||||||||||||||||||||||||||    
T  29872727 tgtaaagaaatgtaatggattgcctcttgcagcaa 29872693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30400830 - 30400593
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | | | ||||||| ||||||||||||||  || |||||  ||    
T  30400830 aaatctgttttgtcgtgtggatcaaaaggtagttccattttagtgtccacccgtgataaagttgttgcaacaatcatgggaacatgccaagctcactctt 30400731  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    ||||| |||||||||||||||| |||||||||||||||||| || |||||||  ||| ||| |   |||||| | || |  |||| | ||| ||||||||    
T  30400730 tgtctggtctctctgatagtgaatgttggttgttgttcaaagaatatgcattgggacattatagagaagagcgtgcagaacttgtagcaataggaaagga 30400631  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30400630 gatagtaaagaaatgtaatggattgcctcttgcagcaa 30400593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 30241731 - 30241966
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||| | ||||||| ||||    |||| |||||||||||||||    
T  30241731 aaatctgtgttgtcatgtggatccaaaggtagttccattttagtatccactcgtgatgaggttgttgcaacaatcacaaaaacaagggaaactcaccgtt 30241830  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    | ||| ||||||| ||   ||| ||||||||||||||||||||| |||||||| ||| ||| |   |||||  ||||||| ||||| |||| ||||||||    
T  30241831 tatctggtctctccgaggatgaatgttggttgttgttcaaacaatatgcatttggacattatagagaagagagtacaaagcttgtgaaaataggaaagga 30241930  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagc 233  Q
    ||| ||||||||||||||||||||||||||||||||    
T  30241931 gattgtaaagaaatgtaatggattgcctcttgcagc 30241966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 30207266 - 30207042
Alignment:
Q  13 tcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgtctagtctct 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||  |  |||| | ||| | |  |||||    
T  30207266 tcgtgtggatccaaaggtagttccattttagtgtccactcgtgatgaggttgttgcgacgatcatgggaacatgccacgctcatcctttatatgttctct 30207167  T
Q  113 ctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaaggagatagtaaagaa 209  Q
    |||||| ||| ||||||||||||||||||||| |||||||| |||   | |   |||||| | || || |||||||||| ||||||||||||||||||||    
T  30207166 ctgataatgaatgttggttgttgttcaaacaatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaataggaaaggagatagtaaagaa 30207067  T
Q  210 atgtaatggattgcctcttgcagca 234  Q
    |||| ||||||||||||||||||||    
T  30207066 atgtgatggattgcctcttgcagca 30207042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 30750398 - 30750162
Alignment:
Q  5 ctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcacc---gttt 101  Q
    |||| ||||| |||||||| |||||||||||||||||| ||||||| |||||||| | | ||||||| ||||  ||||||||  ||||||| |   ||||    
T  30750398 ctgtgttgtcttgtggatccaaaggtagttccattttattgtccacccgtgatgaagttgttgcaacaatcacaggaacatgccaaactcatcatcgttt 30750299  T
Q  102 gtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaaggag 198  Q
    ||||  ||||||||||||||| |||||| |||||||| ||||| |||||||| ||| |||||   |||||| | |  |  | |||| ||| |||||||||    
T  30750298 gtcttctctctctgatagtgaatgttggctgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggag 30750199  T
Q  199 atagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    |||||||||||||||||||||||||||||||||||||    
T  30750198 atagtaaagaaatgtaatggattgcctcttgcagcaa 30750162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 30061124 - 30060888
Alignment:
Q  5 ctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaac---tcaccgttt 101  Q
    |||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| | | ||||||| ||||  |||||||   ||||   ||| |||||    
T  30061124 ctgtgttgtcttgtggatccaaaggtagttccattttagtgtccacccgtgatgaagttgttgcaacgatcacaggaacataccaaactcatcatcgttt 30061025  T
Q  102 gtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaaggag 198  Q
    ||||  ||||||||||||||| ||||||||||||||| ||||| |||||||| ||| | |||   |||||| | |  |  | |||| ||| |||||||||    
T  30061024 gtcttctctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacatcacaaagaagagcgtgctgatctcgtggcaataggaaaggag 30060925  T
Q  199 atagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30060924 atagtaaagaaatgcaatggattgcctcttgcagcaa 30060888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 17417957 - 17418095
Alignment:
Q  15 gtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgtctagtctctct 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| | ||||  | ||||||||||||||  || || | | ||| | | ||||||||    
T  17417957 gtgtggatccaaaggtagttccattttagtgtccactcgtgatgaggttgttgcggcaatcatgggaacatgtcaagcttatcctttatatggtctctct 17418056  T
Q  115 gatagtgactgttggttgttgttcaaacaacatgcattt 153  Q
    |||| ||| ||||||||||||||||||||| ||||||||    
T  17418057 gataatgaatgttggttgttgttcaaacaatatgcattt 17418095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 30521008 - 30521131
Alignment:
Q  34 tccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgtctagtctctctgatagtgactgttggttgt 133  Q
    ||||||||||| |||||||||||| ||||| ||||    ||||||||||||||  || |||| | ||||||| |||| |||||   ||| ||||||||||    
T  30521008 tccattttagtctccactcgtgataaggatgttgctgagatcatgggaacatgccaagctcatcatttgtctggtctatctgaatatgaatgttggttgt 30521107  T
Q  134 tgttcaaacaacatgcatttcgac 157  Q
    ||||||||||| ||||||||||||    
T  30521108 tgttcaaacaatatgcatttcgac 30521131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 30561348 - 30561471
Alignment:
Q  34 tccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgtctagtctctctgatagtgactgttggttgt 133  Q
    ||||||||||| |||||||||||| ||||| ||||    ||||||||||||||  || |||| | ||||||| |||| |||||   ||| ||||||||||    
T  30561348 tccattttagtctccactcgtgataaggatgttgctgagatcatgggaacatgccaagctcatcatttgtctggtctatctgaatatgaatgttggttgt 30561447  T
Q  134 tgttcaaacaacatgcatttcgac 157  Q
    ||||||||||| ||||||||||||    
T  30561448 tgttcaaacaatatgcatttcgac 30561471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 30476131 - 30475979
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    |||||||  ||||| |||||||| |||||   |||||||||||| |||||||||||| ||||| |||||   ||||||||||||||   | |||| | ||    
T  30476131 aaatctgcgttgtcatgtggatccaaaggatcttccattttagtttccactcgtgataaggatgttgcagaaatcatgggaacatgtttagctcatcatt 30476032  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcattt 153  Q
    | ||| |||||||||| |  || |||||||||||||| | |||| ||||||||    
T  30476031 tatctggtctctctgaaaacgaatgttggttgttgtttagacaatatgcattt 30475979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 17983651 - 17983502
Alignment:
Q  4 tctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgt 103  Q
    ||||| ||||| |||||||| ||||||| ||||||||||||||| ||||||||   |||| ||||  | || |||||||||||   |||||  | | |||    
T  17983651 tctgtgttgtcttgtggatccaaaggtacttccattttagtgtctactcgtgacatggatgttgcctcaattatgggaacatgtccaactcgtcctctgt 17983552  T
Q  104 ctagtctctctgatagtgactgttggttgttgttcaaacaacatgcattt 153  Q
    |   ||||||||| | ||| |||| |||||||||||||||| ||||||||    
T  17983551 cagttctctctgacaatgaatgttagttgttgttcaaacaatatgcattt 17983502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 30330529 - 30330611
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaac 83  Q
    |||| ||| |||||||||| ||| |||||||||| |||||| | |||||||| |||||||| | |||| || |||||||||||    
T  30330529 aaatatgtgttgtcgtgtgtatccaaaggtagtttcatttttgcgtccactcctgatgaggttgttgcgacaatcatgggaac 30330611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 26708088 - 26707851
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||  || |||||  ||    
T  26708088 aaatctgttttgtcctgtggatcaaaaggtagttccattttagtgtccactcgtgataaggatgttgcaacaatcatgggaacatgccaagctcactctt 26707989  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||   |||||||||||||| |||||||||| ||||||||    
T  26707988 tgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaagga 26707889  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  26707888 gatagtaaaaaaatgtaatggattacctcttgcagcaa 26707851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 20295932 - 20296169
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||  || |||||  ||    
T  20295932 aaatctgttttgtcatgtggatcaaaaggtagttccattttagtgtcaactcgtgataaggatgttgcaacaatcatgggaacatgccaagctcactctt 20296031  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    ||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||| |||||   |||||||||||||| |||||||||| ||||||||    
T  20296032 tgtctggtctctcttacagtgattgttggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaagga 20296131  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagcaa 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20296132 gatagtaaagaaatgtaatggattgcctcttgcagcaa 20296169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 52352715 - 52352563
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    |||||||| ||||| |||||||| ||||||  || ||||||||| |||||| ||||| ||||| |||| || ||||||||||||||  ||||||| | ||    
T  52352715 aaatctgtgttgtcctgtggatccaaaggtgcttacattttagtttccacttgtgataaggatgttgcgacaatcatgggaacatgtcaaactcatcatt 52352616  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcattt 153  Q
    | ||| | ||||| || |  || |||||| |||| ||||||||| ||||||||    
T  52352615 tatctggcctctcagagaaggaatgttggctgttattcaaacaatatgcattt 52352563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 13617342 - 13617200
Alignment:
Q  10 ttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtttgtctagtc 109  Q
    ||||| |||||||  ||||||| |||  |||||||||| |||||||||   ||| ||||| | ||||||||||||||   ||||||  |||||||   ||    
T  13617342 ttgtcttgtggattgaaaggtacttctgttttagtgtctactcgtgatatcgatgttgcatcaatcatgggaacatgctcaactcattgtttgtcagttc 13617243  T
Q  110 tctctgatagtgactgttggttgttgttcaaacaacatgcatt 152  Q
    ||| |||| |||| |||||||| |||||||||||| |||||||    
T  13617242 tctatgatggtgaatgttggttattgttcaaacaatatgcatt 13617200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 7581069 - 7581305
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    |||||||| |||||  ||||||| ||||||| |||| |||||||||| |||||||||  |||  ||||| | ||||||||||||||   |||||    ||    
T  7581069 aaatctgtgttgtctggtggatcgaaaggtacttccgttttagtgtctactcgtgatatggaggttgcatcaatcatgggaacatgctcaactcgttctt 7581168  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttaca---aagagcatacaaagtttgtggaaattggaaagga 197  Q
    ||||   ||||||||||  ||| |||||||| |||||||||||| |||||||| ||| | | |   |||||  | || || |||||| ||| || |||||    
T  7581169 tgtcagttctctctgatgatgaatgttggttattgttcaaacaatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaagga 7581268  T
Q  198 gatagtaaagaaatgtaatggattgcctcttgcagca 234  Q
    ||||||||| ||||||   ||||||||||||||||||    
T  7581269 gatagtaaaaaaatgtgcgggattgcctcttgcagca 7581305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 25293297 - 25293457
Alignment:
Q  1 aaatctgttttgtcgtgtggatctaaaggtagttccattttagtgtccactcgtgatgaggatattgcaactatcatgggaacatgggaaactcaccgtt 100  Q
    |||||||| ||||||  |||||| ||  ||||||||||||||||||||||||||||||||| | |||| || || |||||||| ||  || |||| |  |    
T  25293297 aaatctgtattgtcggttggatccaatcgtagttccattttagtgtccactcgtgatgaggttgttgcgacaataatgggaacttgtcaagctcatccat 25293396  T
Q  101 tgtctagtctctctgatagtgactgttggttgttgttcaaacaacatgcatttcgacgttacaaaga 167  Q
    |||      ||||| |||  || ||||||||||||||||||||| |||||||| ||| |||||||||    
T  25293397 tgt------tctctaataacgaatgttggttgttgttcaaacaatatgcatttggacattacaaaga 25293457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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