View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1097_low_16 (Length: 250)

Name: NF1097_low_16
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1097_low_16
NF1097_low_16
[»] chr4 (2 HSPs)
chr4 (83-250)||(42233101-42233268)
chr4 (30-71)||(42235037-42235078)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 42233101 - 42233268
Alignment:
Q  83 agtttaggtcaaatgaaaacttaattagggcgattggagactagttaactatatgaggtgaatcctttaggtctagacttttattttatctttgaaatag 182  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42233101 agtttaggtcgaatgaaaacttaattagggcgaatggagactagttaactatatgaggtgaatcctttaggtctagacttttattttatctttgaaatat 42233200  T
Q  183 atttcaagatagttgtgaatgacatccataaacatattattccaagtttggagatatcattaacgatt 250  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42233201 atttcaagatagctgtgaatggcatccataaacatattattccaagtttggagatatcattaacgatt 42233268  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 42235078 - 42235037
Alignment:
Q  30 aatgaatcttaccatcactcactttgaaatatatcaacaact 71  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  42235078 aatgaatcttaccatcaatcactttgaaatatatcaagaact 42235037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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