View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1097_low_18 (Length: 230)

Name: NF1097_low_18
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1097_low_18
NF1097_low_18
[»] chr8 (1 HSPs)
chr8 (69-123)||(12933329-12933383)
[»] chr4 (2 HSPs)
chr4 (69-123)||(14176599-14176653)
chr4 (69-123)||(28609223-28609277)
[»] chr7 (1 HSPs)
chr7 (71-123)||(15299121-15299173)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 12933329 - 12933383
Alignment:
Q  69 tgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12933329 tgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggagag 12933383  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 14176599 - 14176653
Alignment:
Q  69 tgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14176599 tgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggagag 14176653  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 28609277 - 28609223
Alignment:
Q  69 tgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28609277 tgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggagag 28609223  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 15299121 - 15299173
Alignment:
Q  71 atggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagag 123  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  15299121 atggtgagttagtagttgaagatggtgatgaggaagatgttcaggatggagag 15299173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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