View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1097_low_8 (Length: 371)

Name: NF1097_low_8
Description: NF1097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1097_low_8
NF1097_low_8
[»] chr5 (25 HSPs)
chr5 (30-362)||(30337105-30337452)
chr5 (30-362)||(30712008-30712355)
chr5 (30-362)||(30750825-30751172)
chr5 (30-362)||(30061551-30061898)
chr5 (30-362)||(30484580-30484927)
chr5 (30-362)||(30436992-30437324)
chr5 (199-362)||(30675868-30676031)
chr5 (90-362)||(30240973-30241245)
chr5 (30-158)||(30676087-30676215)
chr5 (84-327)||(29854544-29854802)
chr5 (84-327)||(29873407-29873665)
chr5 (199-331)||(30401440-30401572)
chr5 (199-326)||(30207885-30208012)
chr5 (209-327)||(30476748-30476866)
chr5 (91-144)||(30207762-30207815)
chr5 (194-327)||(17417283-17417416)
chr5 (95-169)||(30401321-30401395)
chr5 (193-357)||(30329426-30329590)
chr5 (288-327)||(16415393-16415432)
chr5 (91-150)||(29608335-29608394)
chr5 (245-360)||(30520207-30520322)
chr5 (245-360)||(30560547-30560662)
chr5 (91-169)||(30476615-30476693)
chr5 (91-169)||(30520413-30520491)
chr5 (91-169)||(30560753-30560831)
[»] chr4 (2 HSPs)
chr4 (30-362)||(20295162-20295509)
chr4 (191-328)||(52353316-52353453)
[»] chr7 (1 HSPs)
chr7 (30-362)||(26708511-26708843)
[»] chr3 (2 HSPs)
chr3 (191-323)||(25292566-25292698)
chr3 (30-150)||(25292754-25292874)
[»] chr1 (2 HSPs)
chr1 (191-362)||(7580308-7580479)
chr1 (202-324)||(7100772-7100894)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 30337452 - 30337105
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  30337452 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctcct 30337353  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaacttta---------------aagatgtgaattttctcagtcgactagacttgatcgaacac 214  Q
    ||||||||||||||||||||||||||||| |||||||||||| |               |||| || |||  ||||||||||| ||||| ||||||  ||    
T  30337352 tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac 30337253  T
Q  215 tcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 314  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337252 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30337153  T
Q  315 gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30337152 gaacagccttgatgtgaactaagttgtctgatagcttttgagcctttg 30337105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 30712355 - 30712008
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30712355 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 30712256  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttgatcgaacac 214  Q
    |||||||||||| ||||||||||| |||| ||||||||||               || ||||| || |||  ||||||||||  ||||| ||||||  ||    
T  30712255 tgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtac 30712156  T
Q  215 tcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 314  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30712155 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30712056  T
Q  315 gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  30712055 gaacagccttgatgtgaactaagttgtctgatagcttttgaacctttg 30712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 30750825 - 30751172
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750825 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 30750924  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttgatcgaacac 214  Q
    |||||||||||| ||||||||||| |||| ||||||||||               || ||||| ||  ||  ||||||||||| |||||| |||||  ||    
T  30750925 tgtaatctcttttaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtacatcctctcagtcgacaagacttaatcgagtac 30751024  T
Q  215 tcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 314  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30751025 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30751124  T
Q  315 gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  30751125 gaacagccttgatgcgaactaagttgtctgatagcttttgagcctttg 30751172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 30061551 - 30061898
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061551 tttggcgcccttcagctacttgatctgggatttccctaagagtgccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 30061650  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttgatcgaacac 214  Q
    |||||||||||| ||||||||||| |||| ||||||||||               || ||||| || |||  ||||||||||| ||||||||||||  ||    
T  30061651 tgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtac 30061750  T
Q  215 tcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 314  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061751 tcatcaaggatatcatcgagcacataaacaccatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30061850  T
Q  315 gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    ||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  30061851 gaacagccttgatgtgaactaagttgtttgatagcttttgaacctttg 30061898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 30484580 - 30484927
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30484580 tttggcgcccttcagctacttgatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatctaacctcct 30484679  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttgatcgaacac 214  Q
    |||||||||||||||||||||||| |||| ||||||||||               || ||||| || |||  ||| ||||||| ||||| ||||||  ||    
T  30484680 tgtaatctctttcaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtac 30484779  T
Q  215 tcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 314  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30484780 tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 30484879  T
Q  315 gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  30484880 gaacagctttgatgtgaactaagttgtctgatagcttttgagcctttg 30484927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 30436992 - 30437324
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||||||||||  ||||||||||| |||||||||||||| ||||| | || ||||||||||||||||||| ||||||||||  ||| |||||||     
T  30436992 tttggcgcccttcagcagcttgatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatccaacctccc 30437091  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30437092 tgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtca 30437191  T
Q  230 tcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgt 329  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||  ||   ||||||| |||| |||| |||||||||||||||| |||||||||||    
T  30437192 tcgagcacataaacagcatctttgaggtcttgtagccataccttaatgaagttgtctttgacttgtctcttttcagcatcttcaagaacagccttgatgt 30437291  T
Q  330 gaactaagttgtctgatagcttttgagcctttg 362  Q
     ||||||| ||  |||||| |||| ||||||||    
T  30437292 caactaaggtggttgataggttttcagcctttg 30437324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 199 - 362
Target Start/End: Complemental strand, 30676031 - 30675868
Alignment:
Q  199 agacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttc 298  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30676031 agacttgattgaatactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttc 30675932  T
Q  299 ttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  30675931 ttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgatagcttttgaacctttg 30675868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 90 - 362
Target Start/End: Complemental strand, 30241245 - 30240973
Alignment:
Q  90 aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagatgtgaattttct 189  Q
    ||||||| ||| | || |||||||||||||| |||||||   ||||||||| ||||||||||||||||| |||||||||||| | ||| || |||  |||    
T  30241245 aaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgagagaggttaatcctct 30241146  T
Q  190 cagtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttg 289  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| | ||| | ||||| ||||||||||   ||| ||    
T  30241145 cagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtg 30241046  T
Q  290 aattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    | ||||||||||||||||||||||||||  || |||||   | ||||| ||||||| ||||||||||||||||    
T  30241045 acttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttg 30240973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 30676215 - 30676087
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30676215 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 30676116  T
Q  130 tgtaatctctttcaacctgttaccgatct 158  Q
    |||||||||||| |||||||| |||||||    
T  30676115 tgtaatctcttttaacctgttgccgatct 30676087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 327
Target Start/End: Original strand, 29854544 - 29854802
Alignment:
Q  84 gtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatcttatggcgaaac-------------- 169  Q
    ||||| |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||| ||||||| ||||||||||                  
T  29854544 gtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttgg 29854643  T
Q  170 -tttaaagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccat 268  Q
     || ||||| || |||  ||| ||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||    
T  29854644 tttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccat 29854743  T
Q  269 agcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat 327  Q
    | |||||||||| | ||| ||| ||||||||| |||||||||||||||| ||| |||||    
T  29854744 accttaatagagtggtctgtgacttgtttcttttcagcatcttcaagaacagcattgat 29854802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 84 - 327
Target Start/End: Original strand, 29873407 - 29873665
Alignment:
Q  84 gtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatcttatggcgaaac-------------- 169  Q
    ||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||| | ||||||||                  
T  29873407 gtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttgg 29873506  T
Q  170 -tttaaagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccat 268  Q
     || |||||  |  ||  ||| ||| ||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| | ||||| ||||    
T  29873507 tttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccat 29873606  T
Q  269 agcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat 327  Q
    | |||||||||| | ||| ||| ||||||||| |||||||||||||||| |||||||||    
T  29873607 accttaatagagcggtctgtgacttgtttcttttcagcatcttcaagaacagccttgat 29873665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 30401440 - 30401572
Alignment:
Q  199 agacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttc 298  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| | ||||| ||||||| ||   ||||||| |||| ||    
T  30401440 agactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatatagctgtctttgacttgtctc 30401539  T
Q  299 ttctcagcatcttcaagaatagccttgatgtga 331  Q
    |||||||||||| |||||| ||||| |||||||    
T  30401540 ttctcagcatctacaagaacagcctcgatgtga 30401572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 30207885 - 30208012
Alignment:
Q  199 agacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttc 298  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||| | |   ||| ||| |||    
T  30207885 agactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctttatagagcgattgatgacttgcttc 30207984  T
Q  299 ttctcagcatcttcaagaatagccttga 326  Q
    | ||||||||||||||||| ||| ||||    
T  30207985 tgctcagcatcttcaagaacagcgttga 30208012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 327
Target Start/End: Original strand, 30476748 - 30476866
Alignment:
Q  209 gaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcat 308  Q
    ||||| |||||||| || ||||| |||||||| |||||||||||||| | ||| | ||||| |||||||||| | ||| |||  ||||||| ||||||||    
T  30476748 gaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaatagagcggtctgtgacctgtttctgctcagcat 30476847  T
Q  309 cttcaagaatagccttgat 327  Q
    ||||||||| |||||||||    
T  30476848 cttcaagaacagccttgat 30476866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 30207762 - 30207815
Alignment:
Q  91 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaa 144  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30207762 aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaa 30207815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 17417416 - 17417283
Alignment:
Q  194 cgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaatt 293  Q
    |||| ||||| ||| || ||||||||||| || ||||| |||||||||||| |||||||||| | ||| | ||||| |||  ||||| | ||| ||| ||    
T  17417416 cgaccagactcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgactt 17417317  T
Q  294 gtttcttctcagcatcttcaagaatagccttgat 327  Q
    |||| | ||||||||||||||||| |||||||||    
T  17417316 gtttatgctcagcatcttcaagaacagccttgat 17417283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 30401321 - 30401395
Alignment:
Q  95 ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatcttatggcgaaac 169  Q
    ||||||||| | |||||||||||||| || || ||||||||||||||||||||||| ||||||| | ||||||||    
T  30401321 ttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaac 30401395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 357
Target Start/End: Complemental strand, 30329590 - 30329426
Alignment:
Q  193 tcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaat 292  Q
    ||||| ||||| |||| | |||||||||||||| ||||| |||||||| | | |||||||||  | ||| | ||||| |||||||||| | |||  || |    
T  30329590 tcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaatagagcggtctgagact 30329491  T
Q  293 tgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagc 357  Q
    || || | |||| |||||||||||| | |||||||  || ||||| ||  |||||||||||||||    
T  30329490 tgcttatgctcaacatcttcaagaacaaccttgataagatctaaggtggttgatagcttttgagc 30329426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 16415393 - 16415432
Alignment:
Q  288 tgaattgtttcttctcagcatcttcaagaatagccttgat 327  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  16415393 tgaattgtttctcctcagcatcttcaagagtagccttgat 16415432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 29608394 - 29608335
Alignment:
Q  91 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgtt 150  Q
    |||||| ||||||||||||  ||| | ||| || ||||||||||||||||||||||||||    
T  29608394 aaactttttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgtt 29608335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 30520322 - 30520207
Alignment:
Q  245 gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctg 344  Q
    ||||||||||| | ||| | ||||| ||| |||||| | ||| | | ||||||||||||||||||||||||||  ||||||||   | ||||| ||  ||    
T  30520322 gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttg 30520223  T
Q  345 atagcttttgagcctt 360  Q
    |||||||| |||||||    
T  30520222 atagctttagagcctt 30520207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 30560662 - 30560547
Alignment:
Q  245 gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctg 344  Q
    ||||||||||| | ||| | ||||| ||| |||||| | ||| | | ||||||||||||||||||||||||||  ||||||||   | ||||| ||  ||    
T  30560662 gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttg 30560563  T
Q  345 atagcttttgagcctt 360  Q
    |||||||| |||||||    
T  30560562 atagctttagagcctt 30560547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 30476615 - 30476693
Alignment:
Q  91 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatcttatggcgaaac 169  Q
    ||||||||  |||||||||||||| | ||| || ||||||||||| ||||||||||| || ||||| | | ||||||||    
T  30476615 aaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaac 30476693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 30520491 - 30520413
Alignment:
Q  91 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatcttatggcgaaac 169  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || ||||||||||||    
T  30520491 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaac 30520413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 30560831 - 30560753
Alignment:
Q  91 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatcttatggcgaaac 169  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || ||||||||||||    
T  30560831 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaac 30560753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 20295509 - 20295162
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20295509 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 20295410  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttgatcgaacac 214  Q
    |||||||||||| |||||| ||||||||| ||||||||||               || |||||  | |||  ||||||||||| ||||| ||||||  ||    
T  20295409 tgtaatctctttaaacctgctaccgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgatcgagtac 20295310  T
Q  215 tcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa 314  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20295309 tcatcaaggatatcaccgagcacataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctcagcatcttcaa 20295210  T
Q  315 gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||    
T  20295209 gaacagccttgatgtgaactaagttgtctgatagctttcgagcctttg 20295162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 191 - 328
Target Start/End: Original strand, 52353316 - 52353453
Alignment:
Q  191 agtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttga 290  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||| |  || | |||||  ||||||||| | ||| |||    
T  52353316 agtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaatagagcggtctgtga 52353415  T
Q  291 attgtttcttctcagcatcttcaagaatagccttgatg 328  Q
     |||||||| |||||||||||||||||  |||||||||    
T  52353416 cttgtttctgctcagcatcttcaagaactgccttgatg 52353453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 26708511 - 26708843
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||| |||||||     
T  26708511 tttggcgcccttcagctacttgatatgggctttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatccaacctccc 26708610  T
Q  130 tgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtca 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  26708611 tgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagaggtgaattttttcagtcgactagacttgatcgagcattcatcaaggatgtca 26708710  T
Q  230 tcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgt 329  Q
    ||||||||||| ||| |||||||||||||||||| ||||| ||||||| ||   ||| ||| |||| |||||||||||||||||||||  ||| | ||||    
T  26708711 tcgagcacatatacaacatctttgaggtcttgtagccataccttaataaagttgtctgtgacttgtctcttctcagcatcttcaagaacggccctaatgt 26708810  T
Q  330 gaactaagttgtctgatagcttttgagcctttg 362  Q
     ||||||| ||  |||||| |||| ||||||||    
T  26708811 caactaaggtggttgataggttttcagcctttg 26708843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 191 - 323
Target Start/End: Complemental strand, 25292698 - 25292566
Alignment:
Q  191 agtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttga 290  Q
    ||||||||||| |||||| | |||||||||||||| |||||||||||||| ||| |||||||||| | ||||| ||||| |||||||||| | ||| |||    
T  25292698 agtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaatagagcgatctgtga 25292599  T
Q  291 attgtttcttctcagcatcttcaagaatagcct 323  Q
     |||||||| ||||||||||||||||| |||||    
T  25292598 cttgtttctgctcagcatcttcaagaacagcct 25292566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 25292874 - 25292754
Alignment:
Q  30 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 129  Q
    ||||||||  ||||||||||| |  || | ||||||||| ||||||||||    | |||  ||||||||||||| || ||||||||||||| || |||||    
T  25292874 tttggcgctattcagctacttcagttgagctttccctaacagttccaccctgtcgaagaagaaacttgttcttagttgcagcaatatcatccaatctcct 25292775  T
Q  130 tgtaatctctttcaacctgtt 150  Q
    |||||||||||||||| ||||    
T  25292774 tgtaatctctttcaacttgtt 25292754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 362
Target Start/End: Complemental strand, 7580479 - 7580308
Alignment:
Q  191 agtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttga 290  Q
    |||||||| || |||||  |||||||||||||||| ||||| |||||||| || ||||||||||| |  || |||||||  | ||||||  | ||  | |    
T  7580479 agtcgactggatttgattaaacactcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagtta 7580380  T
Q  291 attgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg 362  Q
    |||| ||||| ||||| |||| ||||| |||||||||  |  ||||| |   ||||||||||||||||||||    
T  7580379 attgcttcttttcagcgtcttgaagaacagccttgatcagttctaaggttcttgatagcttttgagcctttg 7580308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 7100772 - 7100894
Alignment:
Q  202 cttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttc 301  Q
    |||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||| |  || | |||||  | ||||||| | ||| | ||||| |||||     
T  7100772 cttgatggaacattcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttt 7100871  T
Q  302 tcagcatcttcaagaatagcctt 324  Q
    ||||| |||||||||| ||||||    
T  7100872 tcagcgtcttcaagaacagcctt 7100894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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