View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10980_high_4 (Length: 221)

Name: NF10980_high_4
Description: NF10980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10980_high_4
NF10980_high_4
[»] chr8 (21 HSPs)
chr8 (1-207)||(13200029-13200236)
chr8 (9-165)||(2529800-2529957)
chr8 (1-207)||(2170246-2170455)
chr8 (1-207)||(43270356-43270563)
chr8 (18-200)||(13396311-13396494)
chr8 (1-207)||(37434038-37434245)
chr8 (18-207)||(13879514-13879704)
chr8 (144-207)||(20824346-20824409)
chr8 (18-197)||(32266487-32266667)
chr8 (18-208)||(9922524-9922715)
chr8 (144-207)||(17699532-17699595)
chr8 (21-207)||(25090313-25090500)
chr8 (18-200)||(41665403-41665586)
chr8 (6-202)||(5181581-5181778)
chr8 (1-197)||(7924292-7924489)
chr8 (21-197)||(8299729-8299906)
chr8 (9-56)||(42177744-42177791)
chr8 (144-198)||(172153-172207)
chr8 (6-186)||(34137011-34137192)
chr8 (153-207)||(42177616-42177670)
chr8 (1-54)||(17699388-17699441)
[»] chr2 (11 HSPs)
chr2 (1-206)||(12645442-12645648)
chr2 (1-207)||(10999978-11000184)
chr2 (22-207)||(40176596-40176781)
chr2 (6-202)||(17764994-17765191)
chr2 (6-208)||(41206927-41207130)
chr2 (22-207)||(38604401-38604587)
chr2 (3-207)||(15917562-15917767)
chr2 (7-207)||(14439665-14439865)
chr2 (18-100)||(33515919-33516001)
chr2 (6-199)||(28252631-28252825)
chr2 (1-201)||(4552075-4552276)
[»] chr6 (14 HSPs)
chr6 (9-207)||(20883060-20883259)
chr6 (9-207)||(11462326-11462520)
chr6 (1-207)||(17606361-17606568)
chr6 (6-207)||(21630134-21630338)
chr6 (1-207)||(10577276-10577483)
chr6 (18-201)||(2553560-2553744)
chr6 (144-206)||(17579109-17579171)
chr6 (1-208)||(12734031-12734239)
chr6 (6-199)||(14373026-14373220)
chr6 (144-206)||(17573683-17573745)
chr6 (144-206)||(18651262-18651324)
chr6 (6-208)||(15958839-15959042)
chr6 (8-208)||(24767450-24767651)
chr6 (145-201)||(21168250-21168306)
[»] chr4 (18 HSPs)
chr4 (97-206)||(55725714-55725824)
chr4 (9-206)||(20002632-20002837)
chr4 (18-207)||(54483186-54483376)
chr4 (18-208)||(1828566-1828757)
chr4 (1-207)||(12697719-12697926)
chr4 (18-207)||(48312018-48312208)
chr4 (18-201)||(15740144-15740328)
chr4 (120-207)||(45472736-45472824)
chr4 (1-207)||(8361006-8361213)
chr4 (8-208)||(7403826-7404027)
chr4 (104-200)||(19755276-19755373)
chr4 (104-200)||(19784433-19784530)
chr4 (1-197)||(23642628-23642825)
chr4 (24-207)||(2822064-2822248)
chr4 (18-197)||(47685932-47686112)
chr4 (1-197)||(13270928-13271125)
chr4 (1-55)||(4548399-4548453)
chr4 (116-199)||(47418825-47418909)
[»] chr7 (10 HSPs)
chr7 (9-207)||(37254672-37254871)
chr7 (9-207)||(25619373-25619572)
chr7 (18-208)||(47876906-47877097)
chr7 (18-201)||(11277285-11277469)
chr7 (18-208)||(17720558-17720749)
chr7 (37-207)||(18532570-18532741)
chr7 (18-208)||(235463-235656)
chr7 (18-200)||(37919467-37919650)
chr7 (18-199)||(29967898-29968080)
chr7 (1-197)||(4938165-4938362)
[»] chr5 (18 HSPs)
chr5 (9-207)||(18359119-18359317)
chr5 (1-207)||(33385401-33385608)
chr5 (6-207)||(27766953-27767155)
chr5 (144-207)||(25857451-25857514)
chr5 (18-208)||(28535701-28535892)
chr5 (1-200)||(10776670-10776870)
chr5 (18-201)||(23238307-23238491)
chr5 (144-207)||(8300209-8300272)
chr5 (18-199)||(27795406-27795588)
chr5 (1-201)||(27117194-27117395)
chr5 (1-201)||(30732347-30732548)
chr5 (18-201)||(8227949-8228133)
chr5 (18-208)||(35983817-35984008)
chr5 (1-201)||(12825105-12825306)
chr5 (104-208)||(31641521-31641625)
chr5 (144-208)||(42928181-42928245)
chr5 (104-202)||(19255154-19255253)
chr5 (1-197)||(42513626-42513823)
[»] chr1 (10 HSPs)
chr1 (9-207)||(37191237-37191436)
chr1 (1-207)||(43388273-43388480)
chr1 (144-207)||(16917836-16917899)
chr1 (18-205)||(51993757-51993945)
chr1 (1-201)||(51052386-51052587)
chr1 (1-201)||(35540955-35541156)
chr1 (1-197)||(6050509-6050706)
chr1 (1-201)||(11909138-11909339)
chr1 (6-200)||(47623111-47623304)
chr1 (161-208)||(28351781-28351828)
[»] chr3 (19 HSPs)
chr3 (18-208)||(34332841-34333032)
chr3 (1-207)||(35214398-35214605)
chr3 (6-207)||(11203730-11203932)
chr3 (9-207)||(19890592-19890791)
chr3 (106-207)||(29523772-29523874)
chr3 (18-207)||(40930555-40930745)
chr3 (18-207)||(48570066-48570256)
chr3 (1-207)||(12342253-12342459)
chr3 (1-207)||(33496453-33496660)
chr3 (1-201)||(2364183-2364384)
chr3 (8-208)||(26771015-26771216)
chr3 (1-201)||(7312682-7312883)
chr3 (18-200)||(19920263-19920446)
chr3 (2-48)||(11310382-11310428)
chr3 (144-196)||(7031055-7031107)
chr3 (161-208)||(15312650-15312697)
chr3 (106-203)||(36801106-36801204)
chr3 (116-199)||(10323606-10323690)
chr3 (144-197)||(7032368-7032421)
[»] scaffold0472 (1 HSPs)
scaffold0472 (18-201)||(3175-3359)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-197)||(105880-106077)
[»] scaffold0369 (1 HSPs)
scaffold0369 (144-197)||(11242-11295)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 13200029 - 13200236
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||    
T  13200029 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccacacccagtaacacaaaaccgagcctccataggtagaattctgcg 13200128  T
Q  101 ctctgccaaattgtattttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13200129 ctctgccaaattgtattttgtaggtaaacgatccctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 13200228  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  13200229 ttttgatg 13200236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 2529800 - 2529957
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||| | |||||||||| || ||| |||    
T  2529800 aaaattgggcaagacaaaaacaaatgagtcacatcttcaacatgcccacaccctgtaacacaaaaccgagcctccaaaagtagaattccacgatctacca 2529899  T
Q  109 aattgtattttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttt 165  Q
    |||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||    
T  2529900 aattgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttt 2529957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2170246 - 2170455
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaac--cgagcctccataggtagaattccg 98  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||||||| |||||| |||  || |||||||||  |||   |||| || |||||| ||     
T  2170246 atgcaccaaaaattggacaagacaaaaacaaatgattcacatcttcaacctgcccacaccccgttacacaaaacaccgattttccacagatagaatccca 2170345  T
Q  99 cgctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
    || ||| |||||||  |||| ||||||||| ||||| ||||  |  ||||||||||||| |||||||||| |||||||||||||||||| | ||||||||    
T  2170346 cgttctaccaaatttgatttagtaggtaaacgatccctcaacggtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccagattaactcca 2170445  T
Q  198 tattttgatg 207  Q
    ||||||||||    
T  2170446 tattttgatg 2170455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 43270356 - 43270563
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||||||| |||||| | |  || |||||||||||||| |||| || ||||||  | ||    
T  43270356 atgcaccaaaaattggacaagacaaaaacaaatgattcacatcttcaacctgcccacaacccgttacacaaaaccgagcttccacagatagaatctcacg 43270455  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||| |||||||   ||| ||||| ||| ||||| |||| ||  |||||| |||||| |||||||||| |||||||||||||||||| |  |||||||||    
T  43270456 ttctaccaaatttgttttagtaggcaaacgatccttcaacagtcgccaagtaaggatagaaacttttaaaggaacctgtttatgccagatgaactccata 43270555  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  43270556 ttttgatg 43270563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 13396311 - 13396494
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| ||||| ||| || || | ||||||||| | ||    
T  13396311 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattatttt 13396410  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    ||||||||||  |||| ||||  ||  ||||||||||||| || ||||| |||||||| ||||||||||||| |||||||||||    
T  13396411 ttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacttgtttatgccaaattaactccatat 13396494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37434038 - 37434245
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| |||||  | |  || ||||||||||||   |||| || || ||| || ||    
T  37434038 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagatataatcccacg 37434137  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||  |||||||  |||| ||||||||| ||||| |||| ||  |||||||||| || || ||||||| |||||| ||||||||||||| ||||||||||    
T  37434138 ttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaagaatagagacttttaaaggaacatgtttatgccaaattaactccata 37434237  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  37434238 ttttgatg 37434245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 13879704 - 13879514
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| ||||| ||||||||||||||||||| | |  || ||||||| || ||||||||  |||| ||| || || | ||||||||||  ||    
T  13879704 caagacaaaaacagatgagacacatcttcaacatgcccacatcccgtgacacaaagcctagcctccaacggtaaaatgccacgatttgccaaattggctt 13879605  T
Q  118 ttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||||||||| ||| |||||| | | ||||||||| || || |||||| ||||| |||| ||| ||||| |||||||||||| |||||||    
T  13879604 tagtaggtaaacgatccctcaacaaccgccaagcaaagactgtaactttgagaggtacctatttgtgccagactaactccatactttgatg 13879514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 20824346 - 20824409
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  20824346 gccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 20824409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 32266487 - 32266667
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| ||||| ||| || || | |||||||||   ||    
T  32266487 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattacttt 32266586  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
    | ||||||||  |||| ||||| ||   |||||||||||| || ||||| |||||||||||||||||||||| ||||||||    
T  32266587 tcgtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactcca 32266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 9922524 - 9922715
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | |||||||| |||| |||| | | || |||||| | ||| ||||||| ||||| ||| || || | ||||||||| | ||    
T  9922524 caagacaaaaacaaatgattgacatcttctacattcccacaaccagaaacacacatccgcgcctccagaggtaaaatgccacggtttgccaaattatctt 9922623  T
Q  118 ttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||  ||||| |||  ||  | || |||||||| |||||||| |||||||||||| ||||||||| ||||||||  |||||||||    
T  9922624 ttgtaggtaaccgatccctcagaagtcgtcatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaactccaagttttgatgt 9922715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 17699532 - 17699595
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  17699532 gccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatg 17699595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 25090313 - 25090500
Alignment:
Q  21 gacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtattttg 120  Q
    |||| ||||| ||||| ||||| ||||||||||||| | |   | ||||||| || ||||||||| || | ||| ||||| | || |||||||  ||| |    
T  25090313 gacagaaacaaatgagacacattttcaacatgcccacatcccatgacacaaagcctagcctccatcggcaaaatgccgcgatttgtcaaattggctttag 25090412  T
Q  121 taggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||   ||||| |||| | | |||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||| |||||    
T  25090413 taggtagtcgatccctcaacaaccgccaagcaaggattgaaacttttagaggtacctgtttgtgctagactaactccatattgtgatg 25090500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 41665586 - 41665403
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| ||||| |||  |  | | ||||||||| | ||    
T  41665586 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgtcatggtttgccaaattatttt 41665487  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    |||||||||| ||||| || |  |   ||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||    
T  41665486 ttgtaggtaactgatctcttaggaatcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatat 41665403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 5181581 - 5181778
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||||  | ||||| | ||| ||||| ||||||| ||| |  | ||  || | |     
T  5181581 ccaaaagttgggcaagacaaaaacatatgattctcatcttcaacttgcccgcatctagtgatacacaaccgcgcctccaaaggaatgactcgacggttta 5181680  T
Q  106 ccaaattgtattttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattt 202  Q
     |||||| | |||||| |||||||||| |||||   || ||||| |||| ||  | ||||||||||| |||||||||||||||| || ||||||||||    
T  5181681 tcaaattatcttttgttggtaaatgatccctcagccgccgccaaacaagaatatagacttttagaggcacctgtttatgccaaattatctccatattt 5181778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 7924292 - 7924489
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||| |||||||| |||  |||| | | || ||| || |||||  |||||| || |||||| || ||    
T  7924292 atgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacg 7924391  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  7924392 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 7924489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 8299729 - 8299906
Alignment:
Q  21 gacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtattttg 120  Q
    |||||||||| |||||| |||||||| |||  |||| | | || |||||| || ||  |||||| || |||||| || || | |||||||||   |||||    
T  8299729 gacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacacataatcgctcctccacagatagaatgccacgatttgccaaattaagttttg 8299828  T
Q  121 taggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
    |||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  8299829 taggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtcca 8299906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 42177791 - 42177744
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgccca 56  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  42177791 aaaattggacaagagaaaaacatatgattcacatcttcaacatgccca 42177744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 172153 - 172207
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccat 198  Q
    ||||||||||||| || ||||| |||||||||||||||||||||| ||| |||||    
T  172153 gccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccat 172207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 34137192 - 34137011
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    |||||| ||||||||||||||||||  ||| |||||| || |||   |||| | | |||| |||| |||||  |||||| ||| |  || ||||| | ||    
T  34137192 ccaaaatttgggcaagacaaaaacaagtgattcacattttgaacgcacccacaaccagtagcacacaaccgcccctccacaggaatgataccgcggtttg 34137093  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgcca 186  Q
    ||||||| | ||| ||||||||| ||||| |||  ||| |||||||||| || || ||||| ||||| ||||||||||||||    
T  34137092 ccaaattttctttcgtaggtaaacgatccatcataagccgccaagcaagaatagagactttgagaggtacctgtttatgcca 34137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 42177670 - 42177616
Alignment:
Q  153 ggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    |||| |||||||||| ||||||||||| |||||| | |||||||| |||||||||    
T  42177670 ggatagaaacttttaaaggaacctgttaatgccatattaactccaaattttgatg 42177616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17699388 - 17699441
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcc 54  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| ||||    
T  17699388 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcc 17699441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 12645442 - 12645648
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||| |||    
T  12645442 atgcgccaaaaattgggcaagacaaaaacaaatgagtcacatcttcaacatgcccacaccctgtaacacaaaaccgagcctccaaaggtagaattctgcg 12645541  T
Q  101 ctctgccaaattgtattttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     |||| |||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  12645542 atctgtcaaattgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagagaaacctgtttatgccaaattaactccata 12645641  T
Q  200 ttttgat 206  Q
    |||||||    
T  12645642 ttttgat 12645648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 11000184 - 10999978
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||| || |||| |||| |||||||||||||||||||| |    || |||||||||||||| |||| || |||||| || ||    
T  11000184 atgcaccaaaaattggacaagataagaacaaatgattcacatcttcaacatgcccacattccgttacacaaaaccgagcttccacagatagaatcccacg 11000085  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
     |||||||||||  |||| ||||| ||| |||||  || |||  |||||||||||| |||||||||| || |||||||||||| || | |||||||||||    
T  11000084 ttctgccaaatttgatttagtaggcaaacgatccctaacagccaccaagcaaggatagaaacttttaaagaaacctgtttatggcagattaactccatat 10999985  T
Q  201 tttgatg 207  Q
    |||||||    
T  10999984 tttgatg 10999978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 40176596 - 40176781
Alignment:
Q  22 acaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtattttgt 121  Q
    ||||||||| ||||| ||||||||||||||||||| | |  || ||||||| || ||||||||| |||| ||  ||||| | || |||||||  ||| ||    
T  40176596 acaaaaacaaatgagacacatcttcaacatgcccacatcccgtgacacaaagcctagcctccatcggtaaaag-ccgcgatttgtcaaattgactttagt 40176694  T
Q  122 aggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||| ||||| |||| | | |||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  40176695 aggtaaacgatccctcaacaaccgccaagcaaggactgaaacttttagaggtacctgtttgtgccagactaactccatattttgatg 40176781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 17765191 - 17764994
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    |||||||||||||||||||||||||  ||| |||||||||| || || ||| | | ||| ||||| ||||| ||||||| ||| |  || || || | ||    
T  17765191 ccaaaaattgggcaagacaaaaacaagtgattcacatcttccacgtgaccacaaccagtgacacacaaccgcgcctccaaaggaatgataccacggtttg 17765092  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattt 202  Q
    |||||||   ||| ||||||||||||||| |||||||| |||||||||| || || ||||| |||||| ||||||||||||| | |||||||||||||    
T  17765091 ccaaatttgctttcgtaggtaaatgatccctcaatagccgccaagcaagaatagagactttaagaggagcctgtttatgccatattaactccatattt 17764994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 41206927 - 41207130
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    |||||| |||| |||||||| |||| |||| | ||||||||||| |||||  | | ||| ||||| ||||| |||||||  || | ||| || || | ||    
T  41206927 ccaaaagttggacaagacaagaacaaatgattgacatcttcaacgtgcccgcatccagtgacacacaaccgcgcctccaagggaataatgccacgatttg 41207026  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttg 204  Q
    ||||||| | ||||||||||||  ||||| |||  ||| ||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||||| |    
T  41207027 ccaaattattttttgtaggtaaccgatccctcagaagccgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatatttgg 41207126  T
Q  205 atgt 208  Q
    ||||    
T  41207127 atgt 41207130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 38604587 - 38604401
Alignment:
Q  22 acaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtattttgt 121  Q
    ||||||||| |||| | |||||||||||||||||| | |  |  ||||| ||||||||||||||  | || || || || | ||||||||||  | ||||    
T  38604587 acaaaaacacatgatttacatcttcaacatgcccacagcctgagacacataaccgagcctccatgagaaggatgccacgatatgccaaattgactattgt 38604488  T
Q  122 aggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||| |||| || || ||| |||| ||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||    
T  38604487 aggtaaacgatctcttaacagcagccatgcaaggattgaaacttttagaggtacttgtttatgccagattaactccatattttgatg 38604401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 15917562 - 15917767
Alignment:
Q  3 gcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgct 102  Q
    ||||||||| |||| |||||||||||||||||| |||||||||||||||||||| | | ||| ||||| |||||  | |||| ||| | ||| || || |    
T  15917562 gcgccaaaagttggacaagacaaaaacatatgattcacatcttcaacatgcccacaaccagtgacacacaaccgcacttccaaaggaataataccacgat 15917661  T
Q  103 ctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
     |||||||||   ||||||||||||| ||||| |||  ||   ||||||||||||  | ||||| |||||||||| ||||||| ||| |||||| |||||    
T  15917662 ttgccaaattaacttttgtaggtaaacgatccctcagcagtccccaagcaaggatacagactttcagaggaacctatttatgcgaaattaactcaatatt 15917761  T
Q  202 ttgatg 207  Q
    ||||||    
T  15917762 ttgatg 15917767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 14439665 - 14439865
Alignment:
Q  7 caaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgc 106  Q
    |||||||||| |||||||||| || |||| ||||||||||||| | |||| | |  || ||| |||||||||| |||| || |||||| || || ||| |    
T  14439665 caaaaattggacaagacaaaa-caaatgattcacatcttcaacctacccacatcccgttacataaaaccgagcttccacagatagaatcccacgttctac 14439763  T
Q  107 caaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttga 205  Q
    ||||||  |||| ||||||||| ||||| |||| ||  | ||||| | ||| |||||||||| |||||||||||||||||| | |||||||||| |||||    
T  14439764 caaatttgatttagtaggtaaacgatccctcaacagtcgtcaagccaagatagaaacttttaaaggaacctgtttatgccagattaactccatagtttga 14439863  T
Q  206 tg 207  Q
    ||    
T  14439864 tg 14439865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 33516001 - 33515919
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    ||||||||||||||||||| ||||||||||||||||||| | || || ||||||| || ||||||||| |||| ||| |||||    
T  33516001 caagacaaaaacatatgagacacatcttcaacatgcccacatctcgtgacacaaagcctagcctccatcggtaaaatgccgcg 33515919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 28252631 - 28252825
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    ||||||| ||| ||||||||||||| |||| ||||||||||| |||| ||| | |  | |||||| |||||  |||||||| | | ||| ||  | | ||    
T  28252631 ccaaaaaatggacaagacaaaaacaaatgattcacatcttcatcatgaccacaaccggaaacacataaccgcccctccatatgaataatgccatggtttg 28252730  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
    |||||||    || ||||||||  ||||| |||| ||| |||||||||| || || ||||||||||| |||||||||||||||| ||| ||||||    
T  28252731 ccaaatttcccttcgtaggtaagcgatccctcaaaagccgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaattccata 28252825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4552075 - 4552276
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||| ||| |||  |||| | | || |||||| |||||  |||||| || |||||| || ||    
T  4552075 atgcaccaaaagttgcacaagacaaaaacaaatgagaaacattttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacg 4552174  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | |||||||||   ||||||||||||  ||||| |||  ||  ||||||||||||| || ||||| |||||||||| ||||||||||| ||| ||||||    
T  4552175 atttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttaagaggaacctatttatgccaaattaagtccata 4552274  T
Q  200 tt 201  Q
    ||    
T  4552275 tt 4552276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 20883259 - 20883060
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||| | |  || ||||||||||||||||||| || || ||| || || ||| |||    
T  20883259 aaaattggacaagacaaaaacatatgattcatatcttcaacatgcccacatcccgtgacacaaaaccgagcctccacagatataatgccacgatctacca 20883160  T
Q  109 aattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||  |||| |||||||||  |||| |||| ||| ||||||||||||| |||||||||| |||||||| ||||||||| | ||||||||||||||||||    
T  20883159 agttcgatttagtaggtaaacaatccctcaacagccgccaagcaaggatagaaacttttaaaggaacctatttatgccagattaactccatattttgatg 20883060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 11462326 - 11462520
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| | |  || ||| ||||||||| ||||  |  || ||| || || |||||||    
T  11462326 aaaattggacaagacaaaaacatatgattcacatcttcaacatgcccacatcccgtgacaaaaaaccgagtctccgcatatataatgccacgatctgcca 11462425  T
Q  109 aattgtattttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||| |||| ||||||||| ||| |||||| |||||||||||||||||||||||||||     ||||||||||| ||| | ||||||||||||||||||    
T  11462426 agttggatttagtaggtaaaagatccctcaacagctgccaagcaaggattgaaactttt-----aacctgtttataccagattaactccatattttgatg 11462520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 17606568 - 17606361
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| |||||  | |  || |||||||| |||   |||| || || |||||| ||    
T  17606568 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgtatcccgttacacaaaatcgattttccacagctataattccacg 17606469  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||  |||||||  |||| ||||||||||||||| |||| ||  ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  17606468 ttccaccaaatttgatttagtaggtaaatgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccata 17606369  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  17606368 ttttgatg 17606361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 21630338 - 21630134
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||| |||||  | |  || ||||||||||||   |||| || || ||| || || ||      
T  21630338 ccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagatataatcccacgttcca 21630239  T
Q  106 ccaaattgt--attttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattt 202  Q
    ||||||| |  |||||||||||||| ||||| |||||||  ||||| ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||    
T  21630238 ccaaatttttgattttgtaggtaaacgatccctcaatagtcgccaaacaaggatagaaacttttaaaggaacctggttatgccaaattaactccatattt 21630139  T
Q  203 tgatg 207  Q
    |||||    
T  21630138 tgatg 21630134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 10577483 - 10577276
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| |||||  | |  || ||||||||||||   |||| || || ||| || ||    
T  10577483 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagttataatcccacg 10577384  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||  |||||||  |||| ||||||||| ||||| |||| ||  |||||||||||||  ||||||||| |||||||||||||||||||| |||||| |||    
T  10577383 ttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactctata 10577284  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  10577283 ttttgatg 10577276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 2553560 - 2553744
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||| | ||||||| ||||| ||| || || | ||||||||| | ||    
T  2553560 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaactgcgcctccaaaggtaaaatgccacggtttgccaaattatttt 2553659  T
Q  118 ttgtaggtaaatgatcct-caatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
    ||||||||||  |||| | ||| ||  ||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||||    
T  2553660 ttgtaggtaaccgatctttcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 2553744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 17579171 - 17579109
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgat 206  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  17579171 gccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgat 17579109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 12734031 - 12734239
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||||||| |||| |||| | |||| |||||| |||||  |||||| || |||||| || ||    
T  12734031 atgctccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacattcccacatctagaaacacataaccgctcctccagagatagaatgccacg 12734130  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
       | |||||||   ||||||||||||  ||||| |||  ||  ||||||||||||| || ||||| |||||||||||||||||||||| ||| ||||||    
T  12734131 ggttaccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaaatccata 12734230  T
Q  200 ttttgatgt 208  Q
    || ||||||    
T  12734231 ttatgatgt 12734239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 14373220 - 14373026
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    ||||||| ||| ||||||||||||| |||| | ||||||||| |||||||| | |  | |||||| |||||  |||||||||  | ||| || || | ||    
T  14373220 ccaaaaaatggacaagacaaaaacaaatgatttacatcttcatcatgcccataaccggaaacacacaaccgcccctccatagaaataatgccacggtttg 14373121  T
Q  106 ccaaattgtattttgtaggtaaat-gatcctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
    |||||||   ||| ||||||||   | ||||||| |||||||||||||| || || ||||||||||| |||||||||||||||| ||| ||||||    
T  14373120 ccaaatttcctttcgtaggtaagccgttcctcaaaagctgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaaatccata 14373026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 17573745 - 17573683
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgat 206  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||    
T  17573745 gccaagcaaggatagaatcttttaaaggaacctgtttatgccaaattaactccatattttgat 17573683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 18651324 - 18651262
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgat 206  Q
    ||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||    
T  18651324 gccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatattttgat 18651262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 15959042 - 15958839
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    ||||||||||||||||| |||||||  ||| |||||||||| || |||||| |   ||| ||||| ||| |  |||||| ||| |  || ||  | | ||    
T  15959042 ccaaaaattgggcaagataaaaacaagtgattcacatcttccacgtgcccacaatcagtgacacacaactgcacctccaaaggaatgataccatggtttg 15958943  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttg 204  Q
    |||||||   ||| ||||||||||||||| |||| ||| |||||||||| || || ||||| |||||||||||||||||||| | ||||| ||||||| |    
T  15958942 ccaaatttgctttcgtaggtaaatgatccctcaaaagccgccaagcaagaatagagactttaagaggaacctgtttatgccatattaacttcatatttgg 15958843  T
Q  205 atgt 208  Q
    ||||    
T  15958842 atgt 15958839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 24767651 - 24767450
Alignment:
Q  8 aaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcc 107  Q
    |||| |||| ||||||||||||| || | | ||||||||||| | |||  | | |  |||||| ||||| ||||||| ||||| ||| || || | ||||    
T  24767651 aaaagttggacaagacaaaaacaaattattaacatcttcaacgttcccgcaaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgcc 24767552  T
Q  108 aaattgtattttgtaggtaaatgatcctcaatagct-gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgat 206  Q
    ||||| | ||||||||||||  |||||  || |  | | ||||||||||| || ||||| | |||||||||||||||| ||| |||||||||||||||||    
T  24767551 aaattattttttgtaggtaaccgatccctaagaagtcgtcaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgat 24767452  T
Q  207 gt 208  Q
    ||    
T  24767451 gt 24767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 21168250 - 21168306
Alignment:
Q  145 ccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
    |||||| ||||| || ||||| |||||||||| ||||||||||| ||||||||||||    
T  21168250 ccaagctaggatagatactttgagaggaacctatttatgccaaattaactccatatt 21168306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 55725824 - 55725714
Alignment:
Q  97 cgcgctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactc 195  Q
    |||| ||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  55725824 cgcgatctgccaaattgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagaggaacttgtttatgccaaattaactc 55725725  T
Q  196 catattttgat 206  Q
    |||||||||||    
T  55725724 catattttgat 55725714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 20002632 - 20002837
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccatagg-------tagaattccgcgc 101  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||||| | |  || ||||||||||||||||||| ||        |  ||| || ||     
T  20002632 aaaaatggacaagacaaaaacatatgattcacatcttcaacatgcccacatcccgtgacacaaaaccgagcctccacagtccacagatgtaatgccacgg 20002731  T
Q  102 tctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    |||||||| ||| |||| ||||||||| ||||| |||| ||| ||||||||| ||| |||||||||| | |||||||||||||||||| |||||||||||    
T  20002732 tctgccaagttggatttagtaggtaaacgatccctcaacagccgccaagcaatgatagaaacttttaaaagaacctgtttatgccaaattaactccatat 20002831  T
Q  201 tttgat 206  Q
    ||||||    
T  20002832 tttgat 20002837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 54483376 - 54483186
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| ||||| ||||||||||||||||||| | |  || ||||||| || ||||||||| | || ||| ||||| | || |||||||  ||    
T  54483376 caagacaaaaacaaatgagacacatcttcaacatgcccacatcccgtgacacaaagcctagcctccatcgataaaatgccgcgatttgtcaaattggttt 54483277  T
Q  118 ttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||||||||| ||| |||||| | | ||||||||| || || |||||||||||| |||||||| ||||| |||||||||||| |||||||    
T  54483276 tagtaggtaaacgatccctcaacaaccgccaagcaaagactgtaacttttagaggtacctgtttgtgccagactaactccatactttgatg 54483186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 1828757 - 1828566
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| ||||   ||||||||||||| |||| ||| || |||||| ||||| ||||||| ||||| ||| || || | |||||||||   ||    
T  1828757 caagacaaaaacaaatgatcaacatcttcaacattcccacacccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattagttt 1828658  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||   ||| | ||||||   |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  1828657 ttgtaggtaacctatctcgcaatagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatattatgatgt 1828566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12697719 - 12697926
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| |||||  | |  || ||||||||||||   |||| || || ||| || ||    
T  12697719 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagctataatcccacg 12697818  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||  |||||||  |||| ||||||||| ||||| |||| ||  ||||||||||||| |||||||||| |||||||||||||||||||| ||| | ||||    
T  12697819 ttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaatttcata 12697918  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  12697919 ttttgatg 12697926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 48312018 - 48312208
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||| ||||||| ||||| ||||||||||||||||||| | |  || ||||||| || ||||||||| |||| ||| | ||| | || |||||||  ||    
T  48312018 caagataaaaacaaatgagacacatcttcaacatgcccacatcccgtgacacaaagcctagcctccatcggtaaaatgctgcgatttgtcaaattggctt 48312117  T
Q  118 ttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||||||||||||| |||||| | |  ||||||||||| || |||||||||| | |||||||| ||||| |||||||||||| |||||||    
T  48312118 tagtaggtaaatgatccctcaacaacccccaagcaaggactgtaacttttagatgtacctgtttgtgccagactaactccatactttgatg 48312208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 15740144 - 15740328
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||| ||||| |||| ||| || |||||| ||||| ||||||| ||||| ||| || ||   || |||||| | ||    
T  15740144 caagacaaaaacaaatgattaacatctttaacattcccacacccagaaacacacaaccgcgcctccaaaggtaaaatgccacggcttgtcaaattatttt 15740243  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
    ||||||||||  |||| | ||| ||   |||||||||||| || ||||| |||||||||||||||||||||| ||||||||||||    
T  15740244 ttgtaggtaaccgatctcgcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 15740328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 45472824 - 45472736
Alignment:
Q  120 gtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||||| ||||| |||| ||  ||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  45472824 gtaggtaaacgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 45472736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8361006 - 8361213
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| |||||| | |  |  ||||||||||||   || | || || |||||| ||    
T  8361006 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgatacacaaaaccgattttcaacagatataattccacg 8361105  T
Q  101 ctctgccaaattgtattttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
      |  |||||||  ||||  |||||||| ||| |||||  ||  ||||| ||||||| ||||||||||  ||||||||||||||||||| ||||||||||    
T  8361106 tgccaccaaatttgatttactaggtaaacgattcctcagcagtcgccaaacaaggatagaaacttttaagggaacctgtttatgccaaattaactccata 8361205  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  8361206 ttttgatg 8361213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 7403826 - 7404027
Alignment:
Q  8 aaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcc 107  Q
    |||| |||| ||||||||||||| |||| | ||||||||||| | |||  | | ||  ||||| ||||| ||||||| | ||| ||| || || | ||||    
T  7403826 aaaagttggacaagacaaaaacaaatgattgacatcttcaacgttcccgcatccagagacacacaaccgcgcctccaaacgtaaaatgccacggtttgcc 7403925  T
Q  108 aaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgat 206  Q
    ||||| | ||||||||||||  ||||| |||  ||  ||||||||||||| || ||||| | | |||| ||||||||||||| ||||| |||||||||||    
T  7403926 aaattcttttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgaaatgaacttgtttatgccaaattaacttcatattttgat 7404025  T
Q  207 gt 208  Q
    ||    
T  7404026 gt 7404027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 19755276 - 19755373
Alignment:
Q  104 tgccaaattgtattttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    ||||||||| | ||||||||||||  |||| ||||  ||  ||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||    
T  19755276 tgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatat 19755373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 19784530 - 19784433
Alignment:
Q  104 tgccaaattgtattttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    ||||||||| | ||||||||||||  |||| ||||  ||  ||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||    
T  19784530 tgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatat 19784433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 23642825 - 23642628
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||| |||||||| |||  |||| | | || ||| || |||||  |||||| || |||||| || ||    
T  23642825 atgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacg 23642726  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  23642725 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 23642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 2822248 - 2822064
Alignment:
Q  24 aaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtattttgtag 123  Q
    ||||||| ||||| ||||||||||||||||||| |    || || |||| || ||||||||| |||| ||||||| | | || || |||   ||| ||||    
T  2822248 aaaaacacatgagacacatcttcaacatgcccacattccgtgacgcaaagcctagcctccatcggtaaaattccgtgatttgtcagattagctttagtag 2822149  T
Q  124 gtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||  ||||| |||| |   |||||||| ||| ||||||||||||||| |||||||| ||||| | ||||||||||||||||||    
T  2822148 gtaagcgatccctcaacaatcgccaagcatggactgaaacttttagaggtacctgtttgtgccagattaactccatattttgatg 2822064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 47686112 - 47685932
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| | |||  |||||||| |||| |||| | | || |||||| |||||  |||||| || || ||| || || | ||||||||| | ||    
T  47686112 caagacaaaaacaaacgagaaacatcttcgacattcccacatccagaaacacataaccgctcctccacagataaaatgccacggtttgccaaattatgtt 47686013  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
    ||||||||||  |||| ||||| ||  ||||||||||||| || ||||| ||||||||||||||||| |||| ||| ||||    
T  47686012 ttgtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaagtcca 47685932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 13271125 - 13270928
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||| | || ||| |||||||| |||  |||| | | |||||| || |||||  |||||| || |||||| || ||    
T  13271125 atgcaccaaaagttgcacaagacaaaaataaattagtaacatcttcgacaatcccacatccagtaactcataaccgctcctccacagatagaatgccacg 13271026  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  13271025 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 13270928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4548453 - 4548399
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgccc 55  Q
    |||| ||||||||||||||||||||||| | |||| ||||||||||||| |||||    
T  4548453 atgcaccaaaaattgggcaagacaaaaataaatgattcacatcttcaacctgccc 4548399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 47418825 - 47418909
Alignment:
Q  116 ttttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
    ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||||    
T  47418825 ttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccata 47418909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 37254672 - 37254871
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    |||||||| |||||||||||||||||| |||||||||||| ||| ||| |    || ||||||||||||| ||||| || || ||| || |  |||||||    
T  37254672 aaaattggacaagacaaaaacatatgattcacatcttcaaaatgtccacattccgtgacacaaaaccgagtctccacagatataatgccacaatctgcca 37254771  T
Q  109 aattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||| |||| ||||||||| ||||| |||| | | |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||    
T  37254772 agttggatttagtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaagtaacctgtttatgccagattaactccatattttgatg 37254871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 25619373 - 25619572
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| | |  || |||||||| ||  |||||| || |  ||| || || |||||||    
T  25619373 aaaattggacaagacaaaaacatatgattcacatcttcaacatgcccacatcctgtgacacaaaatcggtcctccacagatgcaatgccacgatctgcca 25619472  T
Q  109 aattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||| |||| ||||||||  | ||| |||| | | ||||||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  25619473 agttggatttagtaggtaatcgttccctcaacaaccgccaagcaaggatagaaacttttaaaggaacctgtttatgccatattaactccatattttgatg 25619572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 47876906 - 47877097
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||  | | || |||||| ||||| ||||||| ||||| ||| || || | ||||||||| | ||    
T  47876906 caagacaaaaacaaatgattaacatcttcaacgttcccgcatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattatttt 47877005  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    |||||||||| ||||| ||||  ||  ||||||||||||| || ||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  47877006 ttgtaggtaactgatctctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccctattttgatgt 47877097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 11277469 - 11277285
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    |||||| |||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| ||||| ||| || || | ||||||||| | ||    
T  11277469 caagactaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattatttt 11277370  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
    | ||||||||  |||| ||||| ||  ||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||||    
T  11277369 tcgtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 11277285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 17720558 - 17720749
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||  ||| |||| | |||| |||||| | ||| ||||||| ||||| ||| || || | ||||||||| | ||    
T  17720558 caagacaaaaacaaatgattaacatcttcttcattcccacaactagaaacacacatccgcgcctccagaggtaaaatgccacggtttgccaaattatctt 17720657  T
Q  118 ttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||  ||||| |||  ||  |||| |||||||| |||||||| |||||||||||| ||||||||| ||||||||  |||||||||    
T  17720658 ttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaactccaagttttgatgt 17720749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 18532570 - 18532741
Alignment:
Q  37 tcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtattttgtaggtaaatgatcc-t 135  Q
    ||||||||||||| |||||| | |  || ||||||||||||   |||| || ||||||||| || ||| ||||| |  |||| ||||||||| ||||| |    
T  18532570 tcacatcttcaacctgcccacatcccgttacacaaaaccgattttccacagatagaattccacgttctaccaaaattgatttagtaggtaaacgatccct 18532669  T
Q  136 caatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||| ||  |||||||||||||  ||||||||| |||||||||||||||| | | ||||||||||||||||||    
T  18532670 caacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgcgagattaactccatattttgatg 18532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 235656 - 235463
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaat--tgta 115  Q
    ||||||||||||| |||| | ||||||||||| | | |  | | || |||||| ||||| ||||||| ||||| ||| || || | ||||||||  | |     
T  235656 caagacaaaaacaaatgattaacatcttcaacgttctcgcaaccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaatgatttt 235557  T
Q  116 ttttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||||  ||||| |||  ||  ||||||||||||| || ||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  235556 ttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgagatgaacctgtttatgccaaattaactccatattttgatgt 235463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 37919467 - 37919650
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||| | |||| | ||||||||||| | |||| | |||| |||||| ||||| ||||||| ||||| ||| |  || | ||||||||| | ||    
T  37919467 caagacaaaaataaatgattaacatcttcaacgttcccacaactagaaacacacaaccgcgcctccaaaggtaaaatgcaacggtttgccaaattatttt 37919566  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    ||||||||||   ||| ||||  ||  ||||||||||||| || ||||| |||||||||||||||| ||||| ||||| |||||    
T  37919567 ttgtaggtaaccaatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttataccaaattaacttcatat 37919650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 29967898 - 29968080
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| ||||| ||| ||  | | |||||||||   ||    
T  29967898 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccatggtttgccaaattacttt 29967997  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
    | ||||||||  |||| ||||| ||    ||||||||||| || ||||| |||||||||||||||||||||| ||||||||||    
T  29967998 tcgtaggtaaccgatctctcaaaagtcctcaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccata 29968080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 4938362 - 4938165
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||| |||||||| |||  |||| | | || ||| || |||||  |||||| || |||||| || ||    
T  4938362 atgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacg 4938263  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  4938262 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 4938165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 18359317 - 18359119
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||| | |  || |||||||||||| |||||| |  || ||| |  || |||||||    
T  18359317 aaaatcggacaagacaaaaacatatgattcacatcttcaacatgcccagatcccgtgacacaaaaccgatcctccacatatataatgca-cgatctgcca 18359219  T
Q  109 aattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||| |||| ||||||||| ||||| |||| | | |||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||    
T  18359218 agttggatttagtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaaggaacctgtttatgctagattaactccatattttgatg 18359119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 33385608 - 33385401
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| |||||| | |  |  ||||||||||||   |||| || || |||||| ||    
T  33385608 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgatacacaaaaccgattttccacagatataattccacg 33385509  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
      |  |||||||  |||| ||||||||| ||||| |||| ||  ||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||    
T  33385508 tgccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccata 33385409  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  33385408 ttttgatg 33385401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 27766953 - 27767155
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||| |||||  | |  || ||||||||||||   |||| |  || ||| || || ||      
T  27766953 ccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacatatataatcccacgttcca 27767052  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttg 204  Q
    |||||||  |||||||||||||| ||||| |||| ||  |||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||    
T  27767053 ccaaatttgattttgtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactccatattttg 27767152  T
Q  205 atg 207  Q
    |||    
T  27767153 atg 27767155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 25857514 - 25857451
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  25857514 gccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 25857451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 28535892 - 28535701
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| ||||   |||||||| |||| |||| | | || |||||| | | | ||||||| ||||| ||| || || | ||||||||| | ||    
T  28535892 caagacaaaaacaaatgatcgacatcttctacattcccacaaccagaaacacacatctgcgcctccaaaggtaaaatgccacggtttgccaaattatttt 28535793  T
Q  118 ttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||  ||||| |||  ||  ||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||| |||||||||    
T  28535792 ttgtaggtaaccgatccctcagaagtcgccaagcaaggatagaaactttgagaggaacctgtgtatgccaaattaactccatgttttgatgt 28535701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 10776670 - 10776870
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| |||||| | |  |  ||||||||||||   |||| || || ||| || ||    
T  10776670 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacttgcccacatcccgatacacaaaaccgattttccacagatataatcccacg 10776769  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
      |  |||||||  |||| ||||||||| ||||| |||  ||  ||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||    
T  10776770 tgccaccaaatttgatttagtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccata 10776869  T
Q  200 t 200  Q
    |    
T  10776870 t 10776870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 23238307 - 23238491
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| || || ||| || || | |||||||||   ||    
T  23238307 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaagctaaaatgccacggtttgccaaattacttt 23238406  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
    | ||||||||  |||| ||||| ||   |||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||    
T  23238407 tcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttgagaggaacctatttatgccaaattaactccatatt 23238491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 8300272 - 8300209
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  8300272 gccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 8300209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 27795406 - 27795588
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| ||||| ||||||||||||||||||| | |  || ||||| | || ||||||||  |||| ||| || || | ||||||||||  ||    
T  27795406 caagacaaaaacaaatgagacacatcttcaacatgcccacagcccgtgacacatagcctagcctccaacggtaaaatgccacgatttgccaaattggctt 27795505  T
Q  118 ttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
    | ||||| ||| ||| |||||| | | ||||||||| || || |||||| ||||| |||||||| ||||| ||||||||||||    
T  27795506 tagtaggcaaacgatccctcaacaaccgccaagcaaagactgtaactttgagaggtacctgtttgtgccagactaactccata 27795588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 27117395 - 27117194
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||||||| |||| |||| | | || |||||| |||||  ||||||||| |||||| || ||    
T  27117395 atgctccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacattcccacagccagaaacacataaccgctcctccatagatagaatgccacg 27117296  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | | |||||||   |||||| |||||  | ||| |||  ||  ||||||||||||| || ||||| |||||||||||||||||||||| ||| ||||||    
T  27117295 gtttaccaaattaagttttgtgggtaaccggtccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccata 27117196  T
Q  200 tt 201  Q
    ||    
T  27117195 tt 27117194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 30732548 - 30732347
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||||||| |||  |||| | | || |||||| |||||  |||||| || |||||| || ||    
T  30732548 atgcaccaaaagttgtacaagacaaaaacaaatgagaaacatcttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacg 30732449  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | |||||||||   ||||||||||||  ||||| |||  ||  ||||||||| ||| || ||||| |||||||||||||||||||||| ||| ||||||    
T  30732448 atttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaagatagatactttgagaggaacctgtttatgccaaattaagtccata 30732349  T
Q  200 tt 201  Q
    ||    
T  30732348 tt 30732347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 8227949 - 8228133
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | | || | | || |||||| ||||| ||||||| ||||| |||  | || | |||||||||   ||    
T  8227949 caagacaaaaacaaatgattaacatcttcaacgttctcacatccagaaacacacaaccgcgcctccaaaggtaaaatgtcacggtttgccaaattacttt 8228048  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
    | ||||||||  |||| ||||| ||   |||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||||    
T  8228049 tcgtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaactccatatt 8228133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 35984008 - 35983817
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||| |||| |||| |||| | | |  |||||| ||||| ||||||| ||||| |||  |  | | ||||||||| | ||    
T  35984008 caagacaaaaacaaatgattgacaacttctacattcccacaaccaaaaacacacaaccgcgcctccaaaggtaaaatgtcatggtttgccaaattatttt 35983909  T
Q  118 ttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||  ||| |||||  ||  ||||||||||||| || ||||| |||||||||||| || |||||| ||||||||| |||||||||    
T  35983908 ttgtaggtaaccgattcctcagaagtcgccaagcaaggatagatactttgagaggaacctgtgtaagccaaattaactccatgttttgatgt 35983817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12825105 - 12825306
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||||||| |||  |||| | | || |||||| |||||  |||||| || |||||| || ||    
T  12825105 atgcaccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacg 12825204  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | |||||||||   ||||||||||||  ||||| |||  ||  |||||||||||||  | ||||| |||||||| ||||||||||||| ||| ||||||    
T  12825205 atttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatacatactttgagaggaacttgtttatgccaaattaagtccata 12825304  T
Q  200 tt 201  Q
    ||    
T  12825305 tt 12825306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 31641521 - 31641625
Alignment:
Q  104 tgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattt 202  Q
    ||||||||| | ||||||||||||  ||||| ||| |||   ||| |||||||| |||||||| |||||||||||| ||||||||| ||||||||| |||    
T  31641521 tgccaaattattttttgtaggtaaccgatccctcagtagtctccatgcaaggatagaaacttt-agaggaacctgtgtatgccaaattaactccatgttt 31641619  T
Q  203 tgatgt 208  Q
    ||||||    
T  31641620 tgatgt 31641625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 42928181 - 42928245
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||| ||||||| || ||||| |||||||||||||||| ||||| ||||||||||||| |||||    
T  42928181 gccaaacaaggatagagactttgagaggaacctgtttataccaaattaactccatatttggatgt 42928245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 19255253 - 19255154
Alignment:
Q  104 tgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattt 202  Q
    ||||||||| | ||||||||||||  ||||| |||  | | ||||||||||||| || ||||| |||| || |||||||||||||| |||||||||||||    
T  19255253 tgccaaattattttttgtaggtaaccgatccctcagaaaccgccaagcaaggatagatactttgagagaaatctgtttatgccaaattaactccatattt 19255154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 42513626 - 42513823
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||| | |||||| |||||||| |||  |||| | | || ||| || |||||  |||||| || ||||||  | ||    
T  42513626 atgcaccaaaagttgcacaagacaaaaaaaaatgagtaacatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgtcacg 42513725  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  42513726 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 42513823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 37191436 - 37191237
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| | |  || |||||||| ||| |||||| || |  ||| || || |||||||    
T  37191436 aaaattggacaagacaaaaacatatgattcacatcttcaacatgcccacatcccgtgacacaaaatcgatcctccacagatgtaatgccacgatctgcca 37191337  T
Q  109 aattgtattttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||| |||| ||||||||  |||| ||||| ||| |||||||||||||  ||||||||| | ||||| |||||||||| | ||||||||||||||||||    
T  37191336 agttggatttagtaggtaatcgatctctcaacagccgccaagcaaggatataaacttttaaatgaaccagtttatgccagattaactccatattttgatg 37191237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 43388273 - 43388480
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| ||||   | |  || ||||||||||||   |||| || || ||| || ||    
T  43388273 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcctgcatcccgttacacaaaaccgattttccacagctataatcccacg 43388372  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||  |||| ||  |||| ||||||||| ||||| |||| |   ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  43388373 ttccaccaattttgatttagtaggtaaacgatccctcaacaatcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccata 43388472  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  43388473 ttttgatg 43388480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 16917899 - 16917836
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  16917899 gccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 16917836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 51993945 - 51993757
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    |||||||||| || ||||| ||||||||||||||||||| | |  || ||||||| || ||||||||| |||| ||| ||| | | || |||||||  ||    
T  51993945 caagacaaaatcaaatgagacacatcttcaacatgcccacatcccgtgacacaaagcctagcctccatcggtaaaatgccgtgatttgtcaaattggctt 51993846  T
Q  118 ttgtaggtaaatgatcctcaat-agctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttga 205  Q
    | ||||||||| |||||   || | | |||||||||||  || |||||||||||| |||||||| ||||| |||||||||||| |||||    
T  51993845 tagtaggtaaacgatcccttatcaaccgccaagcaagggctgtaacttttagaggtacctgtttgtgccagactaactccatactttga 51993757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 51052386 - 51052587
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||||||| |||  |||| | | || |||||| |||||  |||||| || |||||| || ||    
T  51052386 atgcaccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacaatcccacatccagaaacacataaccgctcctccacagatagaatgccacg 51052485  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | |||||||||   ||||||||||||  ||||| |||  ||  ||||||||||||| || ||||| |||||||||||||||||||||| ||| ||||||    
T  51052486 atttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccata 51052585  T
Q  200 tt 201  Q
    ||    
T  51052586 tt 51052587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 35540955 - 35541156
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||| |||||||| |||  |||| | | || ||| || || ||  |||||| || |||||| || ||    
T  35540955 atgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacgcataatcgttcctccacagatagaatgccacg 35541054  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | ||||||||| | |||||| |||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||||    
T  35541055 atttgccaaattatgttttgtgggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccata 35541154  T
Q  200 tt 201  Q
    ||    
T  35541155 tt 35541156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 6050509 - 6050706
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||| |||||||| |||  |||| | | || ||| || |||||  |||||| || |||||| || |     
T  6050509 atgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacgcagaaccgctcctccacagatagaatgccaca 6050608  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  6050609 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 6050706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11909339 - 11909138
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||||||| |||  |||| | | || |||||| | |||  |||||| || |||||| || ||    
T  11909339 atgcaccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacaatcccacatccagaaacacatagccgctcctccacagatagaatgccacg 11909240  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | |||||||||   ||||||||||||  ||||| |||  ||  ||||||||| ||| || ||||| |||||||||||||||||||||| ||| ||||||    
T  11909239 atttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaatgatagatactttgagaggaacctgtttatgccaaattaagtccata 11909140  T
Q  200 tt 201  Q
    ||    
T  11909139 tt 11909138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 47623304 - 47623111
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    ||||||| ||||||||||| |||||  ||| ||||||||||| |||||||| | | || |||||||  |||  |||||||||| | |||  | || | ||    
T  47623304 ccaaaaaatgggcaagacagaaacaagtgattcacatcttcatcatgcccacaaccagaaacacaa--ccgcccctccataggaataatgtcacggtttg 47623207  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    |||||||    || ||||||||  | ||| |||| ||| |||||||||| || || ||||| ||||| |||||||||||||||| ||| |||||||    
T  47623206 ccaaatttcccttcgtaggtaagcggtccctcaaaagccgccaagcaagaatagatactttgagaggtacctgtttatgccaaattaattccatat 47623111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 28351781 - 28351828
Alignment:
Q  161 acttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||| ||||| ||| |||||||||||| |||||||||||||||||||    
T  28351781 actttcagagggaccggtttatgccaaattaactccatattttgatgt 28351828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 34333032 - 34332841
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| ||||| ||| || || | ||||||||| | ||    
T  34333032 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattatttt 34332933  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||  |||| ||||  || |||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  34332932 ttgtaggtaatcgatctctcagaagttgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatattatgatgt 34332841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 35214605 - 35214398
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| |||||||| |||| |||| |||||||||||||||||| | | |  || ||||||||| |||| |||| |  |||||| || ||    
T  35214605 atgcaccaaaaattggacaagacaagaacaaatgattcacatcttcaacatgccaacatcccgttacacaaaactgagcttccacatatagaatcccacg 35214506  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     |||| ||||||  |||| ||||| ||| ||||| |||| | | ||||| ||||||| |||||||||| |||||||||||||||||| | ||||||||||    
T  35214505 ttctggcaaatttgatttagtaggcaaacgatccctcaacatccgccaaacaaggatagaaacttttaaaggaacctgtttatgccagattaactccata 35214406  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  35214405 ttttgatg 35214398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 11203730 - 11203932
Alignment:
Q  6 ccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctg 105  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||| |||||  | |  || ||||||||||||   |||| || || ||| || || ||      
T  11203730 ccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagctataatcccacgttcca 11203829  T
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttg 204  Q
    |||||||  |||| ||||||||| ||||| |||| ||  |||||||||| || |||||||||| |||||||||||||||||||| |||||||||||||||    
T  11203830 ccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaagtatagaaacttttaaaggaacctgtttatgccaaattaactccatattttg 11203929  T
Q  205 atg 207  Q
    |||    
T  11203930 atg 11203932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 19890592 - 19890791
Alignment:
Q  9 aaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcca 108  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||| | |  || || ||||  ||| |||||| |  |  ||| || || |||||||    
T  19890592 aaaattggacaagacaaaaacatatgagtcgtatcttcaacatgcccacatcctgtgacgcaaattcgatcctccacaaatgtaatgccacgatctgcca 19890691  T
Q  109 aattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||| |||| ||||||||  ||||| |||| | | || | |||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  19890692 agttggatttagtaggtaatcgatccctcaacaaccgcaatgcaaggatggaaacttttaaaggaacctgtttatgccagattaactccatattttgatg 19890791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 29523874 - 29523772
Alignment:
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttg 204  Q
    |||||||  |||| ||||||||| ||||| |||| ||  ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  29523874 ccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttg 29523775  T
Q  205 atg 207  Q
    |||    
T  29523774 atg 29523772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 40930745 - 40930555
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | |||||||| || | |||| | | || |||||| ||||| ||||||| ||||| ||  || || | ||||||||| | ||    
T  40930745 caagacaaaaacaaatgattgacatcttcgacgttcccacaaccagaaacacacaaccgcgcctccaaaggtaaaaggccacggtttgccaaattatttt 40930646  T
Q  118 ttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    ||||||||||   |||| |||| ||  ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  40930645 ttgtaggtaaccaatccctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaactaactccatgttttgatg 40930555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 48570256 - 48570066
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    |||| |||||||||||||| ||||||||||||||||||| | |  || ||||||| || ||||||||| |||| ||| ||||| | || || |||   ||    
T  48570256 caagtcaaaaacatatgagacacatcttcaacatgcccacatcccgtgacacaaagcctagcctccatcggtaaaatgccgcgatttgtcagattagctt 48570157  T
Q  118 ttgtaggtaaatgat-cctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatg 207  Q
    | ||||||||| ||| |||||| | | || ||||||||| ||||||||||||||| | |||||| ||| | | ||||||||||||||||||    
T  48570156 tagtaggtaaacgatccctcaacaaccgctaagcaaggactgaaacttttagaggtatctgtttgtgctagattaactccatattttgatg 48570066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12342459 - 12342253
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||| || || | |||| ||||||||||||| |||||  | |  || ||||||||||||   |||| || || ||| || ||    
T  12342459 atgcaccaaaaattggacaagagaagaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagctataatcccacg 12342360  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||  |||||||  |||| ||||||||| ||||| |||| ||  ||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||    
T  12342359 ttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaag-aacctgtttatgccaaattaactccata 12342261  T
Q  200 ttttgatg 207  Q
    ||||||||    
T  12342260 ttttgatg 12342253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 33496453 - 33496660
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| ||||||||||| ||||||||||| | |||| ||||||||||||| || ||  | |   | ||||||||||||   |||| || || ||| || ||    
T  33496453 atgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgtccgcatcccattacacaaaaccgattttccacagatataatcccacg 33496552  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     ||  |||||||  |||| ||||||||| ||||| |||| ||  ||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||    
T  33496553 ttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaatgatagaaacttttaaaggaacctgtttatgccaaattaactccata 33496652  T
Q  200 ttttgatg 207  Q
    | ||||||    
T  33496653 tattgatg 33496660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2364183 - 2364384
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||| |||||||| |||  |||| | | || ||| || |||||  |||||| || |||||| || ||    
T  2364183 atgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacg 2364282  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||||    
T  2364283 atttgccaaattaagttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccata 2364382  T
Q  200 tt 201  Q
    ||    
T  2364383 tt 2364384  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 26771216 - 26771015
Alignment:
Q  8 aaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgcc 107  Q
    |||||||||||||||||||||||  ||| |||||||||| || |||||| | | ||| ||||| ||| |  |||||| ||| |  || || || | ||||    
T  26771216 aaaaattgggcaagacaaaaacaagtgattcacatcttccacgtgcccacaaccagtgacacacaactgcacctccaaaggaatgataccacggtttgcc 26771117  T
Q  108 aaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgat 206  Q
    |||||   ||| ||||||||| ||||| |||| ||| |||||| ||| || || ||||| |||||| ||||||||||||| | ||||||||||||| |||    
T  26771116 aaatttgctttcgtaggtaaacgatccctcaaaagccgccaagtaagaatagagactttaagaggagcctgtttatgccacattaactccatatttggat 26771017  T
Q  207 gt 208  Q
    ||    
T  26771016 gt 26771015  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 7312682 - 7312883
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||  |||||||| |||  |||| | | || |||||||| |||  |||||| ||  ||||| || ||    
T  7312682 atgcaccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacaatcccacatccagaaacacaaagccgctcctccacagacagaatgccacg 7312781  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||||    
T  7312782 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagatactttgagaggtacctgtttatgccaaattaagtccata 7312881  T
Q  200 tt 201  Q
    ||    
T  7312882 tt 7312883  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 19920446 - 19920263
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||||   ||||||| |||| |||| | | || |||||| |||||  |||||| || |||||| || || | | |||||||   ||    
T  19920446 caagacaaaaacaaatgagaagcatcttcgacattcccacatccagaaacacataaccgctcctccacagatagaatgcctcgatttaccaaattaagtt 19920347  T
Q  118 ttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatat 200  Q
    ||||||||||  ||||| |||  ||  ||||||||||||| || ||||| |||||||||||||||||||||| ||| |||||||    
T  19920346 ttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccatat 19920263  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 11310428 - 11310382
Alignment:
Q  2 tgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaa 48  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||    
T  11310428 tgcgccaaaatttgggcaagacaaaaacaaatgagtcacatcttcaa 11310382  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 7031107 - 7031055
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcc 196  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||| |||||||    
T  7031107 gccaagcaaggatagaaagttttaaaggaacctgtttatgccaaattaactcc 7031055  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 15312650 - 15312697
Alignment:
Q  161 acttttagaggaacctgtttatgccaaactaactccatattttgatgt 208  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  15312650 acttttagaggtacctgtttatgccaaattaactccaaattttgatgt 15312697  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 36801204 - 36801106
Alignment:
Q  106 ccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatttt 203  Q
    |||||||  |||| ||||||||| ||||| |||  || ||||||||||||||  |||||||||  ||||||| ||||||| ||| ||||||||||||||    
T  36801204 ccaaatttgatttagtaggtaaacgatccctcagcagttgccaagcaaggatataaacttttaagggaacctatttatgctaaattaactccatatttt 36801106  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 10323690 - 10323606
Alignment:
Q  116 ttttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccata 199  Q
    ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||||    
T  10323690 ttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccata 10323606  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 7032368 - 7032421
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
    |||| |||||||| |||| ||| |||||||||||||| |||||||| |||||||    
T  7032368 gccatgcaaggatagaaattttgagaggaacctgtttgtgccaaaccaactcca 7032421  T

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Target: scaffold0472 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 3175 - 3359
Alignment:
Q  18 caagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcgctctgccaaattgtatt 117  Q
    ||||||||||||| |||| | ||||||||||| | |||| | | || |||||| ||||| ||||||| ||||| ||| ||  | | ||||||||||  ||    
T  3175 caagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccatggtttgccaaattgcttt 3274  T
Q  118 ttgtaggtaaatgatc-ctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatt 201  Q
    | ||||||||  |||| ||||| ||   |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  3275 tcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttaagaggaacctgtttatgccaaattaactccatatt 3359  T

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Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 106077 - 105880
Alignment:
Q  1 atgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccaaacctagtaacacaaaaccgagcctccataggtagaattccgcg 100  Q
    |||| |||||| |||  ||||||||||||| |||||| |||||||| |||  |||| | | || ||| || |||||  |||||| || |||||| || ||    
T  106077 atgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatcccacatccagcaacgcataaccgctcctccacagatagaatgccacg 105978  T
Q  101 ctctgccaaattgtattttgtaggtaaatgatcc-tcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
     | |||||||||   ||||||||||||  ||||| ||| |||  ||||||||||||| || ||||| ||||| |||||||||||||||| ||| ||||    
T  105977 atttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 105880  T

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Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 11295 - 11242
Alignment:
Q  144 gccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactcca 197  Q
    ||||||||||||| || ||||| |||||||||||||||||||||| ||| ||||    
T  11295 gccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtcca 11242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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