View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10980_low_4 (Length: 236)

Name: NF10980_low_4
Description: NF10980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10980_low_4
NF10980_low_4
[»] chr7 (5 HSPs)
chr7 (1-225)||(45282305-45282529)
chr7 (1-227)||(45274060-45274286)
chr7 (5-227)||(45293643-45293865)
chr7 (5-227)||(45302603-45302825)
chr7 (5-213)||(45270547-45270755)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45282529 - 45282305
Alignment:
Q  1 gaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45282529 gaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggt 45282430  T
Q  101 caccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagac 200  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45282429 caccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacagac 45282330  T
Q  201 agtactaccgcaattgtcttgtctc 225  Q
    |||||||||||||||||||||||||    
T  45282329 agtactaccgcaattgtcttgtctc 45282305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45274286 - 45274060
Alignment:
Q  1 gaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggt 100  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45274286 gaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggt 45274187  T
Q  101 caccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagac 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  45274186 caccaagctgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacaggc 45274087  T
Q  201 agtactaccgcaattgtcttgtctctg 227  Q
    |||||||||||||||||||||||||||    
T  45274086 agtactaccgcaattgtcttgtctctg 45274060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 45293865 - 45293643
Alignment:
Q  5 ttactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcacc 104  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45293865 ttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggtcacc 45293766  T
Q  105 aagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagacagta 204  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||| || |     
T  45293765 aagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggcaatt 45293666  T
Q  205 ctaccgcaattgtcttgtctctg 227  Q
    ||||||||||||| || ||||||    
T  45293665 ctaccgcaattgtgttatctctg 45293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 45302825 - 45302603
Alignment:
Q  5 ttactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcacc 104  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45302825 ttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggtcacc 45302726  T
Q  105 aagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagacagta 204  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||| || |     
T  45302725 aagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggcaatt 45302626  T
Q  205 ctaccgcaattgtcttgtctctg 227  Q
    ||||||||||||| || ||||||    
T  45302625 ctaccgcaattgtgttatctctg 45302603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 45270755 - 45270547
Alignment:
Q  5 ttactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcacc 104  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||   |    
T  45270755 ttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgccggtatgc 45270656  T
Q  105 aagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagacagta 204  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||| ||||||| |||||| || |     
T  45270655 aagctgtggcatttagaaacataggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaatt 45270556  T
Q  205 ctaccgcaa 213  Q
    |||||||||    
T  45270555 ctaccgcaa 45270547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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