View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10980_low_6 (Length: 216)
Name: NF10980_low_6
Description: NF10980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10980_low_6 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 20775 - 20585
Alignment:
| Q |
1 |
ccaaccacctttttgacaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctcccttt |
100 |
Q |
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| T |
20775 |
ccaaccacctttttgacaacattctgcattgcattctgctcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttctcccctt |
20676 |
T |
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| Q |
101 |
ttaaactcgtcgaaatcgtcaaatgtgtctcttcatctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcat |
191 |
Q |
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| T |
20675 |
ttaaactccttgaaatcgtcacatgtgtctcttcatctaaatagaaccctttttctttcatagccctaagaacaatccaaaactctttcat |
20585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 43435292 - 43435101
Alignment:
| Q |
1 |
ccaaccacctttttgacaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctcccttt |
100 |
Q |
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| T |
43435292 |
ccaaccacctttttaacaacattctgcattgcattttgctcaagcatccctttatagaaatgtgaaagtgcaacaatatcactcttcaaattctcccttt |
43435193 |
T |
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| Q |
101 |
ttaaactcgtcgaaatcgtcaaatgtgtctcttcatctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatc |
192 |
Q |
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| T |
43435192 |
tcaaacccgtagaaatcgtcaaatacgtctcttcatctaaataaaaccctttttccttcatagccctaagaacaatccaaaactctttcatc |
43435101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 43426787 - 43426597
Alignment:
| Q |
1 |
ccaaccacctttttgacaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctcccttt |
100 |
Q |
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||||||||||||||||||||| || ||||||||| |||||||||||||||||||| || || | | |||||||||||||| || || | || ||| |
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| T |
43426787 |
ccaaccacctttttgacaacactctgcattgcatcctgctcaagcatccctttatagaaacgtgaatactcaacaacatcactcttcatcttcgcctttt |
43426688 |
T |
|
| Q |
101 |
ttaaactcgtcgaaatcgtcaaatgtgtctcttcatctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcat |
191 |
Q |
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| T |
43426687 |
tcaaatctgccgaaagtatcaaatgtgtctcttcatctaaataaaacccattttccttcatagccttaagaacaatccaaaactctttcat |
43426597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 43441025 - 43440960
Alignment:
| Q |
135 |
atctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatcgtcttgtt |
200 |
Q |
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| T |
43441025 |
atctaaatagaaccctttatccatcatagccttaagaacaatccaaaactctttcatcttcttgtt |
43440960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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