View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10981_high_1 (Length: 429)

Name: NF10981_high_1
Description: NF10981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10981_high_1
NF10981_high_1
[»] chr8 (5 HSPs)
chr8 (5-413)||(14004103-14004505)
chr8 (5-413)||(5766293-5766701)
chr8 (217-343)||(34935748-34935874)
chr8 (45-146)||(17635611-17635712)
chr8 (45-146)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (86-371)||(1481684-1481963)
chr4 (19-143)||(8186317-8186441)
chr4 (42-134)||(661855-661947)
chr4 (42-142)||(55907634-55907734)
[»] chr6 (4 HSPs)
chr6 (63-146)||(7132323-7132406)
chr6 (63-146)||(7135246-7135329)
chr6 (63-146)||(7138169-7138252)
chr6 (42-146)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (42-142)||(1036570-1036670)
[»] chr1 (2 HSPs)
chr1 (205-238)||(30827961-30827994)
chr1 (43-127)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 413
Target Start/End: Original strand, 14004103 - 14004505
Alignment:
Q  5 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14004103 caatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 14004202  T
Q  105 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004203 aggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 14004302  T
Q  205 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttgg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14004303 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacggttgg 14004402  T
Q  305 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||    
T  14004403 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatag------cggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 14004496  T
Q  405 ccatatatc 413  Q
    |||||||||    
T  14004497 ccatatatc 14004505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 413
Target Start/End: Complemental strand, 5766701 - 5766293
Alignment:
Q  5 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 104  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5766701 caatgaggtggatatcagtgctattaagagaaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 5766602  T
Q  105 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  5766601 aggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatctaggtcaccgtaatagtac 5766502  T
Q  205 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttgg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  5766501 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggctggatacaagatagttagacagaatttgtgacggttgg 5766402  T
Q  305 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766401 tgacggagaggaagtgttttgaggcgacagatagagacttcaaataccgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 5766302  T
Q  405 ccatatatc 413  Q
    |||||||||    
T  5766301 ccatatatc 5766293  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 34935874 - 34935748
Alignment:
Q  217 gaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttggtgacggagagga 316  Q
    |||||||| ||||| |||||||| || |||| ||| |||  ||| |||||| |||   | ||||| ||| |||||||||||| |||||||||||||||||    
T  34935874 gaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagagga 34935775  T
Q  317 agtgttttgaggcgacagatagagact 343  Q
    ||||||| |||| |||||| |||||||    
T  34935774 agtgtttggaggagacagagagagact 34935748  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  45 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 144  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  145 tt 146  Q
    ||    
T  17635612 tt 17635611  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  45 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 144  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  145 tt 146  Q
    ||    
T  17642891 tt 17642890  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 371
Target Start/End: Original strand, 1481684 - 1481963
Alignment:
Q  86 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc 185  Q
    |||||||||| |||||||| |||||| |||||||||| || | |||||||||||||||||| ||   |||||| |  |||||||| || ||||| |||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaa---tgggaaacaggagatttgggtgagaagcgcatc 1481780  T
Q  186 gaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttaga 285  Q
    ||||| |   || ||| | || ||||| |  |||||||| ||||||||||||||||  ||||  || |||  | |   ||||| || | ||||||| |||    
T  1481781 gaggttaaagtagtagaaggaaaggtcaaaagaggtgagattggtgaacctttgtaggaggcgtggaaggtaacg---ggttgaatgccagatagtgaga 1481877  T
Q  286 cagaatttgtgacagttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatc 371  Q
     ||||||||| || ||||||||||||||||||||||||||| ||||| || ||||||||||  ||||| || |||||||| |||||    
T  1481878 gagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttcatgtagcgtttccggtggtcgtcatc 1481963  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8186441 - 8186317
Alignment:
Q  19 tcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagtt 118  Q
    ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||| || || |||| | ||||||| ||||| ||||||| | || |||    
T  8186441 tcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtt 8186342  T
Q  119 ggttggaaagattgagcgatgtgag 143  Q
     ||| || |||||||| ||||||||    
T  8186341 tgttagagagattgagtgatgtgag 8186317  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 134  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||||| || ||  ||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  55907734 gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 55907635  T
Q  142 a 142  Q
    |    
T  55907634 a 55907634  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  142 agttt 146  Q
    |||||    
T  8913379 agttt 8913375  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  142 a 142  Q
    |    
T  1036570 a 1036570  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 30827961 - 30827994
Alignment:
Q  205 gagaggtcgagggaggtgagtttggtgaaccttt 238  Q
    |||||||||||||||||||| |||||||||||||    
T  30827961 gagaggtcgagggaggtgagattggtgaaccttt 30827994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 7555196 - 7555280
Alignment:
Q  43 ttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa 127  Q
    ||||||||| | |||||||| ||||||||||| ||  | |||||||||||||| ||| | ||||| | | || ||||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa 7555280  T

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