View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10981_high_2 (Length: 308)
Name: NF10981_high_2
Description: NF10981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10981_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 49 - 308
Target Start/End: Complemental strand, 2410272 - 2410013
Alignment:
| Q |
49 |
cagcatagagagaaaacaccaaaggagaaaagctaaacctccattaaa-ggatacacttcaagcacattgacaatatttattaattaaggaaaaaattaa |
147 |
Q |
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| T |
2410272 |
cagcaaagagagaaaacaccaaaggagaaaagctaaacctccattaaaaggatacacttcaagcacattgacaatatttattaattaaggaaaaaattaa |
2410173 |
T |
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| Q |
148 |
gaagtatatctgatatactagttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaacttttagatgtatacaaaattgttcttttca |
247 |
Q |
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| T |
2410172 |
caagtatctctgatatattagttaagaaatccgatataataaagatattttagaatttgtgtagtcaaacttttagatgtatacaaaa-tgttcttttca |
2410074 |
T |
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| Q |
248 |
atacaaaatttacttttattgttagctgaactagtgtcccagagacgttagttagcatgac |
308 |
Q |
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| T |
2410073 |
atacaaaatttacttttattgttagcttaactagtgtctcagagacgttagttagcatgac |
2410013 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 18495165 - 18495111
Alignment:
| Q |
164 |
actagttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaact |
218 |
Q |
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| T |
18495165 |
actagttaagatagcaaatatagtaaaaatatcttagaatttgtgtagtcaaact |
18495111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 41996701 - 41996654
Alignment:
| Q |
175 |
aatcaaatataataaagatattttagaatttgtgtagtcaaactttta |
222 |
Q |
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| T |
41996701 |
aatcaaatataataaaaatattttagaacttgtatagtcaacctttta |
41996654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 33648638 - 33648590
Alignment:
| Q |
169 |
ttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaac |
217 |
Q |
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| T |
33648638 |
ttaagaaaacaaatataataaaaatattttagagcttgtgtagtcaaac |
33648590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 8206559 - 8206505
Alignment:
| Q |
162 |
atactagttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaa |
216 |
Q |
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| T |
8206559 |
atactagttaagcaaacaaatataataaaaatatcttagaaattgtgcagtcaaa |
8206505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1831918 - 1831950
Alignment:
| Q |
1 |
ttcaattggatcaaaacaaaattgcctctgctc |
33 |
Q |
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| T |
1831918 |
ttcaattggatcaaaacaaaattgtctctgctc |
1831950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1866361 - 1866393
Alignment:
| Q |
1 |
ttcaattggatcaaaacaaaattgcctctgctc |
33 |
Q |
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| T |
1866361 |
ttcaattggatcaaaacaaaattgtctctgctc |
1866393 |
T |
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