View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10981_high_6 (Length: 223)
Name: NF10981_high_6
Description: NF10981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10981_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1831934 - 1831731
Alignment:
| Q |
1 |
gttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcaca |
100 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831934 |
gttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcaca |
1831835 |
T |
|
| Q |
101 |
tcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacattgttgatatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831834 |
tcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacattgttgatatcaca |
1831735 |
T |
|
| Q |
201 |
aaag |
204 |
Q |
| |
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|||| |
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| T |
1831734 |
aaag |
1831731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1866377 - 1866174
Alignment:
| Q |
1 |
gttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcaca |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866377 |
gttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcaca |
1866278 |
T |
|
| Q |
101 |
tcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacattgttgatatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866277 |
tcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacattgttgatatcaca |
1866178 |
T |
|
| Q |
201 |
aaag |
204 |
Q |
| |
|
|||| |
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|
| T |
1866177 |
aaag |
1866174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 2534277 - 2534169
Alignment:
| Q |
25 |
acaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcacatcactcaccgacacatctccagcc |
124 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||| || |||| |||||||| |||||||||||| || |||| |||||||||||||| | || || |
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| T |
2534277 |
acaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcactgaactcaccgacacatttgcaccc |
2534178 |
T |
|
| Q |
125 |
taataattt |
133 |
Q |
| |
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||||||||| |
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|
| T |
2534177 |
taataattt |
2534169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 2543721 - 2543613
Alignment:
| Q |
25 |
acaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcacatcactcaccgacacatctccagcc |
124 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||| || |||| |||||||| ||||||||| || || |||| |||||||||||||| | || || |
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| T |
2543721 |
acaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatccttgaaatttcactgaactcaccgacacatttgcaccc |
2543622 |
T |
|
| Q |
125 |
taataattt |
133 |
Q |
| |
|
||||||||| |
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|
| T |
2543621 |
taataattt |
2543613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 2556827 - 2556730
Alignment:
| Q |
2 |
ttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcac |
99 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| ||||||||| | || ||||| | | |||| |||||||| |||||||||||||||||||| |
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| T |
2556827 |
ttttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcgatatgtcac |
2556730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 2566653 - 2566546
Alignment:
| Q |
2 |
ttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcacat |
101 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| ||||| ||||||||| | || ||||| | | |||| ||||||||| |||||||||||||||||||| |
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| T |
2566653 |
ttttgatccaatagaatattgaaacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttccaataaatcctcgatatgtcacag |
2566554 |
T |
|
| Q |
102 |
cactcacc |
109 |
Q |
| |
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||||||| |
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| T |
2566553 |
aactcacc |
2566546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 2551148 - 2551104
Alignment:
| Q |
71 |
gaagttccagtaaatcctcgatatgtcacatcactcaccgacaca |
115 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
2551148 |
gaagttccggtaaatcctcgatatgtcacatctctcaccgacaca |
2551104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 2546780 - 2546748
Alignment:
| Q |
86 |
cctcgatatgtcacatcactcaccgacacatct |
118 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
2546780 |
cctcgatatgttacatcactcaccgacacatct |
2546748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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