View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10981_low_1 (Length: 429)

Name: NF10981_low_1
Description: NF10981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10981_low_1
NF10981_low_1
[»] chr8 (5 HSPs)
chr8 (5-413)||(14004103-14004505)
chr8 (5-413)||(5766293-5766701)
chr8 (217-343)||(34935748-34935874)
chr8 (45-146)||(17635611-17635712)
chr8 (45-146)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (86-371)||(1481684-1481963)
chr4 (19-143)||(8186317-8186441)
chr4 (42-134)||(661855-661947)
chr4 (42-142)||(55907634-55907734)
[»] chr6 (4 HSPs)
chr6 (63-146)||(7132323-7132406)
chr6 (63-146)||(7135246-7135329)
chr6 (63-146)||(7138169-7138252)
chr6 (42-146)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (42-142)||(1036570-1036670)
[»] chr1 (2 HSPs)
chr1 (205-238)||(30827961-30827994)
chr1 (43-127)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 413
Target Start/End: Original strand, 14004103 - 14004505
Alignment:
Q  5 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14004103 caatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 14004202  T
Q  105 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004203 aggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 14004302  T
Q  205 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttgg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14004303 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacggttgg 14004402  T
Q  305 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||    
T  14004403 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatag------cggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 14004496  T
Q  405 ccatatatc 413  Q
    |||||||||    
T  14004497 ccatatatc 14004505  T

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Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 413
Target Start/End: Complemental strand, 5766701 - 5766293
Alignment:
Q  5 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 104  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5766701 caatgaggtggatatcagtgctattaagagaaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 5766602  T
Q  105 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  5766601 aggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatctaggtcaccgtaatagtac 5766502  T
Q  205 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttgg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  5766501 gagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggctggatacaagatagttagacagaatttgtgacggttgg 5766402  T
Q  305 tgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766401 tgacggagaggaagtgttttgaggcgacagatagagacttcaaataccgcttacggtggtcatcatcgtcgttatttttcagcaatctgaacacacgttc 5766302  T
Q  405 ccatatatc 413  Q
    |||||||||    
T  5766301 ccatatatc 5766293  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 34935874 - 34935748
Alignment:
Q  217 gaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaatttgtgacagttggtgacggagagga 316  Q
    |||||||| ||||| |||||||| || |||| ||| |||  ||| |||||| |||   | ||||| ||| |||||||||||| |||||||||||||||||    
T  34935874 gaggtgaggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagagga 34935775  T
Q  317 agtgttttgaggcgacagatagagact 343  Q
    ||||||| |||| |||||| |||||||    
T  34935774 agtgtttggaggagacagagagagact 34935748  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  45 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 144  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  145 tt 146  Q
    ||    
T  17635612 tt 17635611  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  45 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 144  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  145 tt 146  Q
    ||    
T  17642891 tt 17642890  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 371
Target Start/End: Original strand, 1481684 - 1481963
Alignment:
Q  86 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc 185  Q
    |||||||||| |||||||| |||||| |||||||||| || | |||||||||||||||||| ||   |||||| |  |||||||| || ||||| |||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaa---tgggaaacaggagatttgggtgagaagcgcatc 1481780  T
Q  186 gaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttaga 285  Q
    ||||| |   || ||| | || ||||| |  |||||||| ||||||||||||||||  ||||  || |||  | |   ||||| || | ||||||| |||    
T  1481781 gaggttaaagtagtagaaggaaaggtcaaaagaggtgagattggtgaacctttgtaggaggcgtggaaggtaacg---ggttgaatgccagatagtgaga 1481877  T
Q  286 cagaatttgtgacagttggtgacggagaggaagtgttttgaggcgacagatagagacttcaaatagcgcttacggtggtcatcatc 371  Q
     ||||||||| || ||||||||||||||||||||||||||| ||||| || ||||||||||  ||||| || |||||||| |||||    
T  1481878 gagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttcatgtagcgtttccggtggtcgtcatc 1481963  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8186441 - 8186317
Alignment:
Q  19 tcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagtt 118  Q
    ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||| || || |||| | ||||||| ||||| ||||||| | || |||    
T  8186441 tcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtt 8186342  T
Q  119 ggttggaaagattgagcgatgtgag 143  Q
     ||| || |||||||| ||||||||    
T  8186341 tgttagagagattgagtgatgtgag 8186317  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 134  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||||| || ||  ||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  55907734 gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 55907635  T
Q  142 a 142  Q
    |    
T  55907634 a 55907634  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  142 agttt 146  Q
    |||||    
T  8913379 agttt 8913375  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  142 a 142  Q
    |    
T  1036570 a 1036570  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 30827961 - 30827994
Alignment:
Q  205 gagaggtcgagggaggtgagtttggtgaaccttt 238  Q
    |||||||||||||||||||| |||||||||||||    
T  30827961 gagaggtcgagggaggtgagattggtgaaccttt 30827994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 7555196 - 7555280
Alignment:
Q  43 ttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa 127  Q
    ||||||||| | |||||||| ||||||||||| ||  | |||||||||||||| ||| | ||||| | | || ||||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa 7555280  T

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