View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10981_low_3 (Length: 251)
Name: NF10981_low_3
Description: NF10981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10981_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13231705 - 13231942
Alignment:
| Q |
1 |
ttttcctatgcttaccgtctatgagactttgatgtttgctgctgatttcagattagggccactttcagccgttgataagaggcagagagttgagaagctt |
100 |
Q |
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| T |
13231705 |
ttttcctatgcttactgtctatgagactttgatgtttgctgctgatttcagattagggccactttcagctgttgataagaggcagagagttgagaagctt |
13231804 |
T |
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| Q |
101 |
attgagcagcttggcttatcagtaagtggtttttatttcaaccttcaaaattatctcctccatgtactaatatctgtcactaactatatagacaagacac |
200 |
Q |
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| T |
13231805 |
attgagcagcttggcttatcagtaagtggtttttatttcaaccttcaaaattatctcctccatgtactaatatctgtcactaactatatagacaagacac |
13231904 |
T |
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| Q |
201 |
cttagattgaagtcgtgtctagtggctaacacgtgtct |
238 |
Q |
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| T |
13231905 |
cttagattgaagtcgtgtctagtggctaccacgtgtct |
13231942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 13232059 - 13232178
Alignment:
| Q |
117 |
tatcagtaagtggtttttatttcaaccttcaaaattatc-tc-ctccatgtactaatatctgtcactaactatatagacaagacaccttagattgaagtc |
214 |
Q |
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|||||||||||| ||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |
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| T |
13232059 |
tatcagtaagtgtttttt--ttcaaccttcaaaattatgatctctccatgtactaatat--gtcactaactatatacacaagacatcttagattgaagtc |
13232154 |
T |
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| Q |
215 |
gtgtctagtggctaacacgtgtct |
238 |
Q |
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| T |
13232155 |
gtgtctagtgtctaacacgtgtct |
13232178 |
T |
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