View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10981_low_4 (Length: 249)
Name: NF10981_low_4
Description: NF10981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10981_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 13231493 - 13231716
Alignment:
| Q |
18 |
gatttgttgcatgatataacaggttatgcaccaaagggttgtatcactgcagtaatgggaccaagtggtgctggaaaatcaactttattggatggacttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13231493 |
gatttgttgcatgatataacaggttatgcaccaaagggttgtatcactgcagtaatgggaccaagtggtgctggaaaatcaactttattggatggacttg |
13231592 |
T |
|
| Q |
118 |
ctgggagaattgcaagtgggagtcttaaaggaaaagtttcattggatggaattagtgtgaatgcaagcttgattaaaagaacttctgcttatattatgca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13231593 |
ctgggagaattgcaagtgggagtcttaaaggaaaagtttcattggatggaaatagtgtgaatgcaagcttgattaaaagaacttctgcttatattatgca |
13231692 |
T |
|
| Q |
218 |
agaagataggctttttcctatgct |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13231693 |
agaagataggctttttcctatgct |
13231716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University