View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10981_low_5 (Length: 231)
Name: NF10981_low_5
Description: NF10981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10981_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 275251 - 275120
Alignment:
| Q |
18 |
tgatgatgattctgaggggccagactcgctaccaggtggtgtaggtcctgctgcatctgcatctccaggttggttatacagagactgtccaagccgcata |
117 |
Q |
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| T |
275251 |
tgatgatgagtctgtggggccagactcgctaccaggtggtgtaggtcctgctgcatctgcagctccgggttggttatatagagactgtccaagctgcata |
275152 |
T |
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| Q |
118 |
acttcctgattgagggcagccatggcatcttt |
149 |
Q |
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| T |
275151 |
acttcctgattgagggcagccatggcatcttt |
275120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 275091 - 275002
Alignment:
| Q |
142 |
gcatctttaagctctaccagctttgcttccaccttctctttcacagagtcgtgtacattttctcctagctctttcaattgcttctcagtc |
231 |
Q |
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| T |
275091 |
gcatctttaagctctaccaactttgcttcaaccttttctttcacagggccaggtaccttttctcctagctctttcaattgcttttcagtc |
275002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 43617462 - 43617531
Alignment:
| Q |
27 |
ttctgaggggccagactcgcta-ccaggtggtgtaggtcctgctgcatctgcatctccaggttggttata |
95 |
Q |
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| T |
43617462 |
ttctgaggggccagactcgctaaccaggtggtgtaggtcctgctgcatctgcagctccaggttggttata |
43617531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 43618455 - 43618509
Alignment:
| Q |
97 |
agagactgtccaagccgcataacttcctgattgagggcagccatggcatctttaa |
151 |
Q |
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| T |
43618455 |
agagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaa |
43618509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 43618536 - 43618581
Alignment:
| Q |
142 |
gcatctttaagctctaccagctttgcttccaccttctctttcacag |
187 |
Q |
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| T |
43618536 |
gcatctttaagctcttccagctttgcttccaccttctctttcacag |
43618581 |
T |
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