View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_high_2 (Length: 734)
Name: NF10982_high_2
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 682; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Complemental strand, 43561986 - 43561265
Alignment:
| Q |
1 |
acagagcaaggtgaagaaaaacagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaatgggtatcagaaatccgcgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43561986 |
acagagcaaggtgaagaaaaacagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaatgggtatcggaaatccgcgaa |
43561887 |
T |
|
| Q |
101 |
cctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561886 |
cctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcag |
43561787 |
T |
|
| Q |
201 |
caattctgaacttccccgaaatagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggt |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561786 |
caattcttaacttccccgaaatagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggt |
43561687 |
T |
|
| Q |
301 |
ggaatttgattctcaaatattgcgctcaacaatctcactcagctctgaagtctctgactcaccttcatattcatcagagtcttcagagcttagtgagatt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43561686 |
ggaatttgattctcaaatattgcgctcaacaatctcactcagctctgaagtctctgactcaccttcatattcatcagagtctacagagcttagtgagatt |
43561587 |
T |
|
| Q |
401 |
gttgagcttcctaatatagaagagagttataactcggttgaggtgagaagtgagtttatgttgattgactcggttgaaagttggttgtatccgtcagtag |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561586 |
gttgagcttcctaatatagaagagagttataactcggttgaggtgagaagtgagtttatgttgattgactcggttgaaagttggttgtatccgtcagtag |
43561487 |
T |
|
| Q |
501 |
aaagtttatgtgacatgatggttgaagaacagagttttttgttataataaaaagaacatagtttagttgtgatattcagcaatgccatatttggttt--g |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
43561486 |
aaagtttatgtgacatgatggttgaagaacagagttttttgttataataaaaagaacatagtttagttgtgatattcagcaatgccatatttggtttagg |
43561387 |
T |
|
| Q |
599 |
gttttgtgaagtttagattatt----gtttgcctcactttcatcagtgtaatataagtacccttcaactgaatttcatcactctttcttcttctctttgg |
694 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561386 |
gttttgtgaagtttagattattgttggtttgcctcactttcatcagtgtaatataagtacccttcaactgaatttcatcactctttcttcttctctttgg |
43561287 |
T |
|
| Q |
695 |
tactaaaaaagaacatagttgt |
716 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
43561286 |
tactaaaaaagaacatagttgt |
43561265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 36077810 - 36077744
Alignment:
| Q |
110 |
aaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctg |
176 |
Q |
| |
|
|||||| |||| ||||| ||||||||| |||| || ||||||||||||| ||| |||||||| |||| |
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|
| T |
36077810 |
aaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 4268648 - 4268763
Alignment:
| Q |
65 |
cgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgc |
164 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||| | | | || || ||||||||||||||||| | |
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| T |
4268648 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
4268747 |
T |
|
| Q |
165 |
atgatgttgctgcttt |
180 |
Q |
| |
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| ||||| || ||||| |
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|
| T |
4268748 |
acgatgtagcagcttt |
4268763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 505615 - 505520
Alignment:
| Q |
107 |
aaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagca |
202 |
Q |
| |
|
||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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|
| T |
505615 |
aaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagggtcattcagca |
505520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 16357926 - 16357796
Alignment:
| Q |
71 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
170 |
Q |
| |
|
||||||||||||||||| ||||| || || || | || || ||| |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||| |
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|
| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
16357827 |
T |
|
| Q |
171 |
ttgctgctttgagtataaagggtcattcagc |
201 |
Q |
| |
|
| |||||||| ||||||||||||||||| |
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|
| T |
16357826 |
tagctgctttagccataaagggtcattcagc |
16357796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 33589193 - 33589286
Alignment:
| Q |
60 |
gaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggc |
153 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||||| || ||||| |||||||||| |
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|
| T |
33589193 |
gaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacatatgctacggctgaaatggc |
33589286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 71010 - 71116
Alignment:
| Q |
71 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
170 |
Q |
| |
|
|||||||| ||||| || ||||||||||| || || || ||||| || || ||||| || |||| | | ||| |||||||||| |||||||||||||| | |
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|
| T |
71010 |
tggggaaagtgggtgtccgaaatccgcgagccacgtaagaaatcgcggatttggctaggcactttccccactgctgaaatggctgctagagcgcatgacg |
71109 |
T |
|
| Q |
171 |
ttgctgc |
177 |
Q |
| |
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|||||| |
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|
| T |
71110 |
ctgctgc |
71116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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