View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_high_20 (Length: 351)
Name: NF10982_high_20
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 38887569 - 38887250
Alignment:
| Q |
16 |
agaaataacacaaggctcatttcatttctacttcactcttgttgtctattgtttgttgttatnnnnnnnnnnnncagttgtccccacccaattcattgcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38887569 |
agaaataacacaaggctcatttcatttctacttcactcttgttgtctattgtttgttgttattatatata----cagttgtccccacccaattcattgcc |
38887474 |
T |
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| Q |
116 |
actttctaactcacgtcctttgttccatttatggttatgctgcattcacacctaaaatcttcttgaaaatcttcctatatctannnnnnn-ttttctaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || |
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| T |
38887473 |
actttctaactcacgtcctttgttccatttatggttatgctgcattcacacctaaaatcttcttcaaaatcttcctatatctaccccccccttttctcca |
38887374 |
T |
|
| Q |
215 |
atatctcctccaaatcccactgaaaatgaggaacagaatcaaccatctcctcccaggtgatttttagcaatcaccaccaactatccttccaaaacctagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38887373 |
atatctcctccaaatcccactgaaaatgaggaacagaatcaaccatctcctcccaggtgatttttagcaatcaccaccaactatccttccaaaacctagc |
38887274 |
T |
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| Q |
315 |
tacctttttcaccctttcccctct |
338 |
Q |
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|||||||||||||||||||||||| |
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| T |
38887273 |
tacctttttcaccctttcccctct |
38887250 |
T |
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