View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_high_21 (Length: 339)
Name: NF10982_high_21
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 52806294 - 52805987
Alignment:
| Q |
1 |
gtgtatccaaacatgcactaaccttttagtaacataacatgtgttcttaattttgtttgatttaagatataaaaggtttcataatgacatattaaatgca |
100 |
Q |
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| T |
52806294 |
gtgtatccaaacatgcactaaccttttagtaacataacatgtgttcttaattttgtttgatttaagatataaaaggtttcataatgacatattaaatgca |
52806195 |
T |
|
| Q |
101 |
accaaaaaagaaaggtaaacataagtacataaaactaaaagtgttgtctagttctgatggtgtttttgaaaggtgattaatttgttgtgcaatttgttga |
200 |
Q |
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| T |
52806194 |
accaaaaaagaaaggtaaacataagtacataaaactaaaagtgttgtctagttctgatggtgtttttgaaaggtgattaattt------------gttga |
52806107 |
T |
|
| Q |
201 |
ggattatgtacggttactgagctatggcagaacacatgctaaaagcattgttggttggtagtaaggcaaatatatgaagaagagtc-nnnnnnnctgctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52806106 |
ggattatgtacggttactgagctatggcagaacacatgctaaaagcattgttggttggtagtaaggcaaatatatgaagaagagtctttcttttctgctt |
52806007 |
T |
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| Q |
300 |
cactttagtttgtcagtata |
319 |
Q |
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|||||||||||||||||||| |
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| T |
52806006 |
cactttagtttgtcagtata |
52805987 |
T |
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