View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10982_high_22 (Length: 332)

Name: NF10982_high_22
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10982_high_22
NF10982_high_22
[»] chr1 (7 HSPs)
chr1 (17-214)||(52823439-52823633)
chr1 (253-322)||(52823331-52823400)
chr1 (124-214)||(11351563-11351653)
chr1 (124-214)||(32988852-32988942)
chr1 (126-214)||(6784335-6784423)
chr1 (124-214)||(21515258-21515348)
chr1 (124-193)||(2536469-2536538)
[»] chr4 (2 HSPs)
chr4 (124-214)||(43989224-43989314)
chr4 (124-214)||(43813137-43813227)
[»] chr8 (2 HSPs)
chr8 (124-214)||(18481288-18481378)
chr8 (146-192)||(7251183-7251229)
[»] chr3 (6 HSPs)
chr3 (124-214)||(51976815-51976905)
chr3 (124-214)||(36684960-36685050)
chr3 (126-214)||(8705769-8705857)
chr3 (126-214)||(9057656-9057744)
chr3 (129-214)||(45736526-45736611)
chr3 (139-192)||(47165333-47165386)
[»] chr2 (3 HSPs)
chr2 (124-214)||(24543268-24543358)
chr2 (124-214)||(29894287-29894377)
chr2 (124-214)||(36365095-36365185)
[»] chr5 (5 HSPs)
chr5 (124-214)||(41197322-41197412)
chr5 (128-214)||(12378574-12378660)
chr5 (124-214)||(30376393-30376483)
chr5 (146-214)||(12714813-12714881)
chr5 (146-214)||(12776044-12776112)
[»] chr6 (2 HSPs)
chr6 (127-214)||(942751-942838)
chr6 (147-194)||(12125894-12125941)
[»] chr7 (2 HSPs)
chr7 (124-214)||(23820578-23820668)
chr7 (124-214)||(24808737-24808824)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 52823633 - 52823439
Alignment:
Q  17 aggtacagtgtatacagaacaaataaatcaaaccaattcccggttaagttaatatacaacatgatattaacacaatttcacatataagtcgtgtgttatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  52823633 aggtacagtgtatacagaacaaataaatcaaaccaattcccggttaagttaatatacaacat---attaacacaatttcacatataagtcgtgtgttatg 52823537  T
Q  117 ggatagatcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    || | | ||||||||||||||||| ||||||||||||| ||| || | |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  52823536 gggtcgctcatgaattagttagggtagctccatctcatactaactcctatgtttacgatgatgtaccgttatgtatccgtgatttgatagctaatgaa 52823439  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 52823400 - 52823331
Alignment:
Q  253 gttagcattggcattcgaatatttcgattttgtgtgcaaaattcaatttctgaaataattcagctctctg 322  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  52823400 gttagcattggcattcgaatatttcgactttgtgtgcaaaattcactttctgaaataattcagctctctg 52823331  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 11351653 - 11351563
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| ||| |||||||||||||||||||| ||||| |||||||||||||| ||||| || || |||||||||||||||    
T  11351653 tcatgaattagctagggtagccccatctcatgctagcttccacgtttatgatgatgtaccgtcatgtattcgagacttgatagctaatgaa 11351563  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 32988942 - 32988852
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||||||||| ||| |||||||||||||||||||  ||||| |||||||||||||| |||||| |  | |||||||||||||||    
T  32988942 tcatgaattagttagggtagccccatctcatgctagcttccgcgtttatgatgatgtaccgtcatgtatctgaaacttgatagctaatgaa 32988852  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 6784335 - 6784423
Alignment:
Q  126 atgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||  ||||| ||||||||||||| |||||||||| ||||| ||| |||||||||| |||||||| || |||||||||||||||    
T  6784335 atgaattaactagggtagctccatctcatactagcttccacgtttatgataatgtaccgtcatgtatccgagacttgatagctaatgaa 6784423  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 21515258 - 21515348
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||| ||||| |||||||||||||| || |||||  | |||||||||||||||    
T  21515258 tcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgtaccgtcatgcatccgatacttgatagctaatgaa 21515348  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 2536538 - 2536469
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatc 193  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||| | | ||||||| || ||||||    
T  2536538 tcatgaattagttagggtagccccatctcatgctagctcccatgtttatggtaatgtaccatcatgtatc 2536469  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 43989314 - 43989224
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||||||||| ||| |||||||||||||||| ||| ||||| |||||||||||||| |||||||| || |||||||||||||||    
T  43989314 tcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgtaccgtcatgtatccgagacttgatagctaatgaa 43989224  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 43813227 - 43813137
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||||||||| ||| ||||||||| ||||||  |  ||||  |||||||||||||| ||||||||| | |||||||||||||||    
T  43813227 tcatgaattagttagggtagccccatctcatactagctctctcgtttttgatgatgtaccgtcatgtatccgtaacttgatagctaatgaa 43813137  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 18481288 - 18481378
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    |||| |||||| ||||| ||| |||||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  18481288 tcataaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgtaccgtcatgtatccgagatttgatagctaatgaa 18481378  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 7251183 - 7251229
Alignment:
Q  146 ccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtat 192  Q
    |||||||||||||||||||||| ||| ||| |||||||||| |||||    
T  7251183 ccatctcatgctagcttccatgattatgataatgtaccgtcatgtat 7251229  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 51976815 - 51976905
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| |||||||||||||||||||| ||| ||||| |||||||||||||| ||||| || || |||||||||||||||    
T  51976815 tcatgaattagctagggtagctccatctcatgctagctcccacgtttatgatgatgtaccgtcatgtattcgagacttgatagctaatgaa 51976905  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 36684960 - 36685050
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| ||| ||||||||||||||||  || ||||| |||||||||||||| ||||| || || |||||||||||||||    
T  36684960 tcatgaattagctagggtagccccatctcatgctagctctcacgtttatgatgatgtaccgtcatgtattcgagacttgatagctaatgaa 36685050  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 8705769 - 8705857
Alignment:
Q  126 atgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||||||| ||| ||||||||| |||||| ||| ||||| ||||||||||| || |||||||| |||||||| | |||||||    
T  8705769 atgaattagttagggtagccccatctcatactagctcccacgtttatgatgatgtaccatcatgtatccgagatttgatggttaatgaa 8705857  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 9057656 - 9057744
Alignment:
Q  126 atgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||||||| ||| ||||||||| |||||| ||| ||||| ||||||||||| || |||||||| |||||||| | |||||||    
T  9057656 atgaattagttagggtagccccatctcatactagctcccacgtttatgatgatgtaccatcatgtatccgagatttgatggttaatgaa 9057744  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 45736526 - 45736611
Alignment:
Q  129 aattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    |||||| ||||| |||  |||||||||||| || ||| ||||| |||||||||||||| |||||||| || |||||||||||||||    
T  45736526 aattagctagggtagcctcatctcatgctaactcccacgtttatgatgatgtaccgtcatgtatccgagacttgatagctaatgaa 45736611  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 47165386 - 47165333
Alignment:
Q  139 ggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtat 192  Q
    |||||| |||||||||||||||| ||| ||||||| ||||||| |||| |||||    
T  47165386 ggcagccccatctcatgctagctcccacgtttacggtgatgtagcgtcatgtat 47165333  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 24543268 - 24543358
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||| ||||| |||||||||||||| |||||||| || |||||||||||||||    
T  24543268 tcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgtaccgtcatgtatccgagacttgatagctaatgaa 24543358  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 29894377 - 29894287
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||| ||||| |||||||||||||| ||||| || || |||||||||||||||    
T  29894377 tcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgtaccgtcatgtattcgagacttgatagctaatgaa 29894287  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 36365095 - 36365185
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||| ||||| | |||||||||||| |||||||  || ||||||| |||||||    
T  36365095 tcatgaattagctagggtagccccatctcatgctagctcccacgtttatggtgatgtaccgtcatgtatccaagacttgatagttaatgaa 36365185  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 41197412 - 41197322
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||| ||||| |||||||||||||| ||||| || || |||||||||||||||    
T  41197412 tcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgtaccgtcatgtattcgagacttgatagctaatgaa 41197322  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 12378660 - 12378574
Alignment:
Q  128 gaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||| ||||| ||| |||||||||||||||| ||| ||||| |||||||||||||| ||||| || || |||||||||||||||    
T  12378660 gaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgtaccgtcatgtattcgagacttgatagctaatgaa 12378574  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 30376483 - 30376393
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| || || |||  ||||||||||||||| | | ||||| |||||||||||||| |||||||| || |||||||||||||||    
T  30376483 tcatgaattagctacggtagcctcatctcatgctagctccaacgtttatgatgatgtaccgtcatgtatccgagacttgatagctaatgaa 30376393  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 12714881 - 12714813
Alignment:
Q  146 ccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||| ||||||||||  |||||||| |||||||||| ||||| |||  |  |||||||||||||||||    
T  12714881 ccatcacatgctagctctcatgtttatgatgatgtactgtcgtctatatggaatttgatagctaatgaa 12714813  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 12776112 - 12776044
Alignment:
Q  146 ccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||| ||||||||||  |||||||| |||||||||| ||||| |||  |  |||||||||||||||||    
T  12776112 ccatcacatgctagctctcatgtttatgatgatgtactgtcgtctatatggaatttgatagctaatgaa 12776044  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 942751 - 942838
Alignment:
Q  127 tgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    |||||||| |||| || | ||||||||||||| || ||| |||||||||||||||||||| ||||||||  | |||||||||||||||    
T  942751 tgaattagctaggacaaccccatctcatgctatctcccacgtttacgatgatgtaccgtcatgtatccgaaacttgatagctaatgaa 942838  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 12125894 - 12125941
Alignment:
Q  147 catctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatcc 194  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||    
T  12125894 catctcatgctagcttccatgtctatgatgatgtaccgtcatgtatcc 12125941  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 23820578 - 23820668
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||| || ||||||||||||||||| |||  |||| |||||||||||||| | |||||| || ||||||| |||||||    
T  23820578 tcatgaattagatagggtagatccatctcatgctagctcccacatttatgatgatgtaccgtcatatatccgagacttgatagttaatgaa 23820668  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 24808824 - 24808737
Alignment:
Q  124 tcatgaattagttagggcagctccatctcatgctagcttccatgtttacgatgatgtaccgtcgtgtatccgtgatttgatagctaatgaa 214  Q
    ||||||||||| ||||  ||| |||||||||||||||   || ||||| |||||||||||||| || |||||||||||| |||||||||||    
T  24808824 tcatgaattagctaggatagccccatctcatgctagc---cacgtttatgatgatgtaccgtcatgcatccgtgatttgttagctaatgaa 24808737  T

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