View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_10 (Length: 481)
Name: NF10982_low_10
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 169 - 465
Target Start/End: Original strand, 28474865 - 28475160
Alignment:
| Q |
169 |
ttatgtgttacttgtttttgtgatcagttccgtgtgatggcttcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaaga |
268 |
Q |
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| T |
28474865 |
ttatgtgtgacttgtttttgtgatcagttctgtgtgatggcttcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaaga |
28474964 |
T |
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| Q |
269 |
tcaatttctctgctgaaaaaccaccaacaccattgttggatacagttaattttccagttcatatgaagaatctgaccacagaggtttgaatcctttatca |
368 |
Q |
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| T |
28474965 |
tcaatttctctgctgaaaaaccaccaacaccattgttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttatca |
28475064 |
T |
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| Q |
369 |
aaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatacaaaagttgttttttctttgtccatgatgt |
465 |
Q |
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| T |
28475065 |
aaaactaggatttatgtttcataggttatggaatatgtatggtacatttaattgactgtgactaatacaaaagttg-tttttctttgtccatgatgt |
28475160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 169 - 436
Target Start/End: Original strand, 28466444 - 28466710
Alignment:
| Q |
169 |
ttatgtgttacttgtttttgtgatcagttccgtgtgatggcttcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaaga |
268 |
Q |
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| T |
28466444 |
ttatgtgtgatttgtttttgtgatcagttctgtgtgatggcttcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaaga |
28466543 |
T |
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| Q |
269 |
tcaatttctctgctgaaaaaccaccaacaccattgttggatacagttaattttccagttcatatgaagaatctgaccacagaggtttgaatcctttatca |
368 |
Q |
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| T |
28466544 |
tcaatttctctgctgaaaaaccaccaacaccattgttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttat-t |
28466642 |
T |
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| Q |
369 |
aaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatac |
436 |
Q |
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| T |
28466643 |
aaacctaggaattatgtttgatatgttatggaataagcatggtacattttattgactgtgactaatac |
28466710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 28474717 - 28474796
Alignment:
| Q |
18 |
ccaaatccaaaccatggttacagaaaccaggttggtttattcatcacatgcacatgaaatattaatatcattaaccaatg |
97 |
Q |
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| T |
28474717 |
ccaaatccaaaccatggttacagaaaccaggttggtttattcatcccatgcacatgaaatattaatatcattaaccaatg |
28474796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 28466299 - 28466369
Alignment:
| Q |
18 |
ccaaatccaaaccatggttacagaaaccaggttggtttattcatcacatgcacatgaaatattaatatcat |
88 |
Q |
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| T |
28466299 |
ccaaatccaaaccatggtttcagaaaccaggttggttttatcatcacatgctcatgaaatattaatatcat |
28466369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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