View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10982_low_11 (Length: 479)
Name: NF10982_low_11
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 22933171 - 22933625
Alignment:
| Q |
19 |
gttcctgagtatcctagagttggtggtcatggcatggctttcacaatagcccctacaaaggatctcaaagctttacctattcagtatcttggtcttttca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
22933171 |
gttcctgagtatcctagagttggtggtcatggcatggctttcacaatagcacctactaaggatctcaatgctttacctattcaatatcttggtcttttca |
22933270 |
T |
|
| Q |
119 |
atgcaagcaatgtttttggtaatttctctaaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
22933271 |
atgcaagcaatgtttttggtaatttctctaaccatatttttgctgtcgagtttgacactgctcaagactttgagtttgatgatattaatgataaccatgt |
22933370 |
T |
|
| Q |
219 |
tggtatagacatcaatagtttgaggtcaaatgcttctgttcctgctggttattacactgataattcaaccaaacaagatcttaatattaaaagtgggaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22933371 |
tggtatagacatcaatagtttgaggtcaaatgcttctgttactgctggttattacactgataattcaaccaaacaagatcttaatattaaaagtgggaaa |
22933470 |
T |
|
| Q |
319 |
ccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaactaaaccgaaaaaaccgatcttgtcctttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22933471 |
ccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaattaaaccgaaaaaaccgatcttgtcctttc |
22933570 |
T |
|
| Q |
419 |
atgtggatctatctcctatttttcatgatactatgtatgttggtttctctgcttc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22933571 |
atgtggatctatctcctatttttcatgatactatgtatgttggtttctctgcttc |
22933625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 22922417 - 22921966
Alignment:
| Q |
19 |
gttcctgagtatcctagagttggtggtcatggcatggctttcacaatagcccctacaaaggatctcaaagctttacctattcagtatcttggtcttttca |
118 |
Q |
| |
|
|||||||| ||||||| | ||||||| |||||||||||||| || |||| |||| |||| ||||||||||||||||||| ||| |||||||||||| | | |
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|
| T |
22922417 |
gttcctgaatatcctaaacttggtggccatggcatggcttttactatagtcccttcaaaagatctcaaagctttacctagtcaatatcttggtcttctga |
22922318 |
T |
|
| Q |
119 |
atgcaagcaatgtttttggtaatttctctaaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgt |
218 |
Q |
| |
|
|| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22922317 |
attcaagtgatgtt---ggtaatttctctaaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgt |
22922221 |
T |
|
| Q |
219 |
tggtatagacatcaatagtttgaggtcaaatgcttctgttcctgctggttattacactgataattcaaccaaacaagatcttaatattaaaagtgggaaa |
318 |
Q |
| |
|
||||||||| || |||||| || | |||||||| || || ||||||||||||| | |||| || | || || ||| ||||||| |||| ||| |
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|
| T |
22922220 |
tggtatagatattaatagtatgcgttcaaatgcaactattactgctggttattatagtgatgatgatatggttcataatattagtattaaaggtggaaaa |
22922121 |
T |
|
| Q |
319 |
ccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaactaaaccgaaaaaaccgatcttgtcctttc |
418 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| | ||| || |||||||| || ||| | |||| |
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|
| T |
22922120 |
ccaattttagtttgggttgattatgattcttcattggaacttattagtgttacactttcaccaacttctaataagcctaaaaaacctattttgacttttc |
22922021 |
T |
|
| Q |
419 |
atgtggatctatctcctatttttcatgatactatgtatgttggtttctctgcttc |
473 |
Q |
| |
|
|| |||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22922020 |
atatggatctatcacctctttttcttgatactatgtatgttggtttctctgcttc |
22921966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 22858591 - 22858498
Alignment:
| Q |
148 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgttggtatagacatcaatagtttga |
241 |
Q |
| |
|
|||||| | |||||||||||| |||||||| ||||||| |||||||||||||||| ||| ||||||||| |||||| |||||||||| ||||| |
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|
| T |
22858591 |
aaccatgtgtttgctgttgagcttgacactattcaagatcttgagtttgatgatatcaataataaccatgctggtattgacatcaataatttga |
22858498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 22815156 - 22815070
Alignment:
| Q |
148 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||| || |||||| |
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|
| T |
22815156 |
aaccatgtttttggtgttgagcttgacactcgtcaagatttgcagtttgatgatatcaatgataaccatgttggtatcgatatcaat |
22815070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 22880693 - 22880631
Alignment:
| Q |
148 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgat |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
22880693 |
aaccatgtttttgctgttgagtttgacactgttcaagattttgagtttgacgatatcaatgat |
22880631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 22889421 - 22889335
Alignment:
| Q |
148 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| |||| ||||||||||||||||||| || |||||||||||||| || || |||||| |
|
|
| T |
22889421 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaacgataaccatgttggaattgatatcaat |
22889335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 22885721 - 22885637
Alignment:
| Q |
150 |
ccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
|||| |||||| | ||||| ||||||||| |||| |||||||||||||||| || |||||||||||| ||||||| || |||||| |
|
|
| T |
22885721 |
ccatgtttttggtattgagcttgacactgatcaaaattttgagtttgatgaaatcaatgataaccatattggtattgatatcaat |
22885637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 22831160 - 22831074
Alignment:
| Q |
148 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| | || ||||||||||||||||||| |||||||| |||||||| || || |||||| |
|
|
| T |
22831160 |
aaccatgtttttggtgttgagcttgacactcgtaaaaattttgagtttgatgatatcaatgataatcatgttggaattgatatcaat |
22831074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 22840140 - 22840095
Alignment:
| Q |
189 |
tgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
22840140 |
tgagtttgatgatatcaatgataaccatgttggtattgatatcaat |
22840095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 22894032 - 22893987
Alignment:
| Q |
189 |
tgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
22894032 |
tgagtttgatgatatcaatgataaccatgttggtattgatatcaat |
22893987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 22809732 - 22809687
Alignment:
| Q |
189 |
tgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| || |||||| |
|
|
| T |
22809732 |
tgagtttgatgatatcaatgataaccatattggtattgatatcaat |
22809687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 22898351 - 22898306
Alignment:
| Q |
189 |
tgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
22898351 |
tgagtttaatgatatcaatgataaccatgttggtattgatatcaat |
22898306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 470
Target Start/End: Complemental strand, 15628498 - 15628047
Alignment:
| Q |
22 |
cctgagtatcctagagttggtggtcatggcatggctttcacaatagcccctacaaaggatctcaaagctttacctattcagtatcttggtcttttcaatg |
121 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||| ||| || ||| ||||||||||||||||||||||| |
|
|
| T |
15628498 |
cctgagtatcctaatataggtggtcatggcatggctttcacaatagcaactactaaggatctcgaaggttcgcctcttcagtatcttggtcttttcaatt |
15628399 |
T |
|
| Q |
122 |
caagcaatgtttttggtaatttctctaaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgttgg |
221 |
Q |
| |
|
| || |||||| |||||||| || |||||| ||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
15628398 |
cgagtaatgtt---ggtaatttttcgaaccatctttttgctgttgaatttgacactgtcttagactttgggtttgatgatattaatgataaccatgttgg |
15628302 |
T |
|
| Q |
222 |
tatagacatcaatagtttgaggtcaaatgcttctgttcctgctggttattacactgataat---tcaaccaaacaaga---tcttaatattaaaagtggg |
315 |
Q |
| |
|
||||||||||||| |||||| || || || | |||| ||||||| ||||| | ||||||| |||||||||||| | |||| |||| ||||||||| |
|
|
| T |
15628301 |
tatagacatcaatggtttgaaatccaaagcatatgttactgctggctattatattgataatgattcaaccaaacaacaacatcttgatatcaaaagtggg |
15628202 |
T |
|
| Q |
316 |
aaaccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaactaaaccgaaaaaaccgatcttgtcct |
415 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||| |||||||| | ||||||| |
|
|
| T |
15628201 |
aaaccaattctagcttgggttgattatgattcttcaataaatcttgttagtgttacactttctccaacttcaacaaaaccaaaaaaaccaactttgtcct |
15628102 |
T |
|
| Q |
416 |
ttcatgtggatctatctcctatttttcatgatactatgtatgttggtttctctgc |
470 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15628101 |
ttcataccgatctatcgcctatttttcatgatactatgtatgttggattctctgc |
15628047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 17394032 - 17394086
Alignment:
| Q |
40 |
ggtggtcatggcatggctttcacaatagcccctacaaaggatctcaaagctttac |
94 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
17394032 |
ggtggtcatggtatgactttcactatagcaactacaaaggatctcaaagctttac |
17394086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 21150585 - 21150671
Alignment:
| Q |
148 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgatattaatgataaccatgttggtatagacatcaat |
234 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| || |||||| |
|
|
| T |
21150585 |
aaccatgtttttggtgttgagcttgacactgttcaagattttgagtttgatgatatcaataataaccatgttggtattgatatcaat |
21150671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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