View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10982_low_12 (Length: 448)
Name: NF10982_low_12
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 27988923 - 27988685
Alignment:
| Q |
21 |
gtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcgaccaaacagtgaagtag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27988923 |
gtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcggccaaacagtgaagtca |
27988824 |
T |
|
| Q |
121 |
tgacacatatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaaccaatatcaaatacagaaagct |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27988823 |
ctacacataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaaccaatatcaaatacagaaagct |
27988724 |
T |
|
| Q |
221 |
cgtactgaaattcacaaaatgcatcaattatgaaaaccg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27988723 |
cgtactgaaattcacaaaatgcatcaattatgaaaaccg |
27988685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 28075456 - 28075218
Alignment:
| Q |
21 |
gtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcgaccaaacagtgaagtag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28075456 |
gtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattcttcggccaaacagtgaagtca |
28075357 |
T |
|
| Q |
121 |
tgacacatatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaaccaatatcaaatacagaaagct |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28075356 |
ctacacataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaaccaatatcaaatacagaaagct |
28075257 |
T |
|
| Q |
221 |
cgtactgaaattcacaaaatgcatcaattatgaaaaccg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28075256 |
cgtactgaaattcacaaaatgcatcaattatgaaaaccg |
28075218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 17765495 - 17765552
Alignment:
| Q |
341 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
398 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||| |||||||||||||||| |
|
|
| T |
17765495 |
acttttatgtatgggcatcggttgaaaattttgtattcttgtcaggaccttgttcttt |
17765552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 26771519 - 26771576
Alignment:
| Q |
341 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
398 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
26771519 |
acttttatgtatgagcatcgactgaaaactttgtgttcttgacaggaccttgttcttt |
26771576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 32536502 - 32536445
Alignment:
| Q |
341 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
398 |
Q |
| |
|
||||||||||||| |||| ||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
32536502 |
acttttatgtatgagcattgactgaaaactttgtattcttgataggaccttgttcttt |
32536445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 15959347 - 15959404
Alignment:
| Q |
341 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
398 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
15959347 |
acttttatgtatgggcatcgactaaaaactttttattcttgactaaaccttgttcttt |
15959404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University