View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10982_low_13 (Length: 429)

Name: NF10982_low_13
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10982_low_13
NF10982_low_13
[»] chr6 (10 HSPs)
chr6 (150-413)||(4573003-4573267)
chr6 (120-287)||(4559223-4559390)
chr6 (1-115)||(4559418-4559532)
chr6 (150-270)||(4566133-4566253)
chr6 (1-115)||(4566276-4566390)
chr6 (1-115)||(4573290-4573404)
chr6 (326-403)||(4587611-4587688)
chr6 (326-411)||(4566029-4566114)
chr6 (166-236)||(4615168-4615237)
chr6 (261-293)||(4587717-4587749)
[»] chr8 (2 HSPs)
chr8 (146-236)||(16684943-16685033)
chr8 (4-107)||(16684776-16684881)
[»] chr7 (1 HSPs)
chr7 (236-281)||(1481875-1481920)
[»] chr2 (1 HSPs)
chr2 (215-287)||(31677362-31677435)
[»] chr4 (2 HSPs)
chr4 (218-270)||(30551590-30551642)
chr4 (215-283)||(37214216-37214284)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 150 - 413
Target Start/End: Complemental strand, 4573267 - 4573003
Alignment:
Q  150 aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttgaaattagtt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4573267 aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcatatttgttgaaattagtt 4573168  T
Q  250 tagtattgtttaagatagttataagttagttatgattattgcttat-nnnnnnngttagttatgattagatgcaaggttggttatattagtgatctttgg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||    
T  4573167 tagtattgtttaagatagttataagttagttatgattattgcttataaaaaaaagttagttatgattagatgcaaggttggttatattagtgatcttagg 4573068  T
Q  349 atcacaatatacagtgtttctcaactttattattctatcaattccaaaataaatcccaaacgatg 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4573067 atcacaatatacagtgtttctcaactttattattctatcaattccaaaataaatcccaaacgatg 4573003  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 120 - 287
Target Start/End: Complemental strand, 4559390 - 4559223
Alignment:
Q  120 gcatatgaagattttccnnnnnnnngactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgtta 219  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4559390 gcatatgaagattttccttttttttgactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgtta 4559291  T
Q  220 gatatagtttcagatttgttgaaattagtttagtattgtttaagatagttataagttagttatgatta 287  Q
    |||||||||||||||||||| ||||||||||  |||| || |||||||||||||||||||||||||||    
T  4559290 gatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttatgatta 4559223  T

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Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4559532 - 4559418
Alignment:
Q  1 attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttactagaataaaagtgtcatctag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4559532 attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttacttgaataaaagtgtcatctag 4559433  T
Q  101 ttcaattttgaaact 115  Q
    |||||||||||||||    
T  4559432 ttcaattttgaaact 4559418  T

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Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 4566253 - 4566133
Alignment:
Q  150 aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttgaaattagtt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  4566253 aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatgtagtttcagatttgttaaaattagtt 4566154  T
Q  250 tagtattgtttaagatagtta 270  Q
    || |||| |  ||||||||||    
T  4566153 taatattttggaagatagtta 4566133  T

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Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4566390 - 4566276
Alignment:
Q  1 attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttactagaataaaagtgtcatctag 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | |||||    
T  4566390 attataaaataaataagtggacataattattttctttgtacaacaaaaatctttgatgtcagaactatcttatacttacttgaatagaagtgccttctag 4566291  T
Q  101 ttcaattttgaaact 115  Q
    |||||||||||||||    
T  4566290 ttcaattttgaaact 4566276  T

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Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4573404 - 4573290
Alignment:
Q  1 attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttactagaataaaagtgtcatctag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  |   |||| ||||| ||||||| |||||    
T  4573404 attataaaataaataagtggtcataattattttctttgtacaacaaaaatctttgatgtcagaactatatatcttatacttgaatagaagtgtcttctag 4573305  T
Q  101 ttcaattttgaaact 115  Q
    |||||||||||||||    
T  4573304 ttcaattttgaaact 4573290  T

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Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 4587688 - 4587611
Alignment:
Q  326 ttggttatattagtgatctttggatcacaatatacagtgtttctcaactttattattctatcaattccaaaataaatc 403  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4587688 ttggttatattagtaatcttaggatcacaatataaagtgtttctcaacttttttattctatcaattccaaaataaatc 4587611  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 4566114 - 4566029
Alignment:
Q  326 ttggttatattagtgatctttggatcacaatatacagtgtttctcaactttattattctatcaattccaaaataaatcccaaacga 411  Q
    ||||||||||||||||| || ||||||||||||| ||| ||||||||||||  |||| |||||||||| ||||||||| |||||||    
T  4566114 ttggttatattagtgattttaggatcacaatataaagtttttctcaacttttctattttatcaattcccaaataaatctcaaacga 4566029  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 4615237 - 4615168
Alignment:
Q  166 tgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt 236  Q
    |||||||| ||||||| | |||||||||||| ||| ||||||| |||| | ||||||||||||| ||||||    
T  4615237 tgtttgatgatatcttcc-actgaatggttggaatgccatgcatgtattttttagatatagtttgagattt 4615168  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 4587749 - 4587717
Alignment:
Q  261 aagatagttataagttagttatgattattgctt 293  Q
    |||||| ||||||||||||||||||||||||||    
T  4587749 aagatatttataagttagttatgattattgctt 4587717  T

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Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 16684943 - 16685033
Alignment:
Q  146 actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16684943 actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt 16685033  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 16684776 - 16684881
Alignment:
Q  4 ataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacact--tactagaataaaagtgtcatctagt 101  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||| |||| | ||||| |||  |||| ||||| ||||||| ||||||    
T  16684776 ataaaataaataagtggacataattattttctttgtacaacaaaagtgtttgatgtgagaagtgtcttatacttgtactggaatacaagtgtcttctagt 16684875  T
Q  102 tcaatt 107  Q
    ||||||    
T  16684876 tcaatt 16684881  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 1481875 - 1481920
Alignment:
Q  236 tgttgaaattagtttagtattgtttaagatagttataagttagtta 281  Q
    |||| ||||||||| | |||||||||||||||||| ||||||||||    
T  1481875 tgttaaaattagttgaatattgtttaagatagttacaagttagtta 1481920  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 31677435 - 31677362
Alignment:
Q  215 tgttagatatagtttcagatttgttgaaattagtttag-tattgtttaagatagttataagttagttatgatta 287  Q
    ||||||| ||||||| |||||||||  |||||||| |  |||| ||||| |||||||||| |||||||||||||    
T  31677435 tgttagagatagtttgagatttgttataattagttaaaatattatttaaaatagttataaattagttatgatta 31677362  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 30551642 - 30551590
Alignment:
Q  218 tagatatagtttcagatttgttgaaattagtttagtattgtttaagatagtta 270  Q
    |||||||||||| ||||||||| |||||| || | ||||||||||| ||||||    
T  30551642 tagatatagtttgagatttgttaaaattatttgaatattgtttaaggtagtta 30551590  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 37214216 - 37214284
Alignment:
Q  215 tgttagatatagtttcagatttgttgaaattagtttagtattgtttaagatagttataagttagttatg 283  Q
    ||||||| ||||||| | |||||||  ||||||||   ||||||||||| |||||| ||||||||||||    
T  37214216 tgttagagatagtttgatatttgttagaattagttggatattgtttaaggtagttaaaagttagttatg 37214284  T

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