View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_14 (Length: 424)
Name: NF10982_low_14
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 70 - 424
Target Start/End: Complemental strand, 47507232 - 47506877
Alignment:
| Q |
70 |
caaaaaggaaatgctaacgaatgctcatccgacattctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatgtattgaaaattgta |
169 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
47507232 |
caaaaaggaaatgctaacgaatgctcatccgacactctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatatattaaaaattgta |
47507133 |
T |
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| Q |
170 |
gcatttaactttcttaagaaatagtgaatttccggatgtagttgttaccaaaaccctttccaaatttgttgctaaaacatagtacgtatatgtgagtttc |
269 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
47507132 |
gcatttaactttcttaagaaatagtgaatttgcggatgtagttgttaccaaaaccctttccaaatttgttactaaaacata----gtatatgtgagtttc |
47507037 |
T |
|
| Q |
270 |
tagatttgaaatgagggtgaaaagtaagtaataccctaagcgtttggaaatgaaggtggttgtttcgtggtaaacacgttaaaataagaaggcccttgtg |
369 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47507036 |
tagatttgaaatgtgggtgaaaagtaagtaataccctaagcgtttggaaatgaaggtggttgtttcgtggtaaacacgttaaaatatgaaggcccttgtg |
47506937 |
T |
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| Q |
370 |
ttggagttagacgccaagccctatgg-----caccacaccacagacaccagcaaggttat |
424 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47506936 |
ttggagttagacgccaagccctatggcaacacaccacaccacagacaccagcaaggttat |
47506877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 31902744 - 31902831
Alignment:
| Q |
105 |
tctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatgtattgaaaattgtagcatttaactttcttaagaaata |
192 |
Q |
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| T |
31902744 |
tctttaaggactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaatatttgactttcttaaggaata |
31902831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 13040285 - 13040325
Alignment:
| Q |
101 |
acattctttaaagaccttaaatagtaaatttttatgtaaaa |
141 |
Q |
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| T |
13040285 |
acattctttaaagactttaaatagtaaatttttatgaaaaa |
13040325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 39156136 - 39156100
Alignment:
| Q |
100 |
gacattctttaaagaccttaaatagtaaatttttatg |
136 |
Q |
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| T |
39156136 |
gacattctttaaagacctttaatagtaaatttttatg |
39156100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 46726250 - 46726166
Alignment:
| Q |
102 |
cattctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatgtattgaaaattgtagcatttaactttcttaa |
186 |
Q |
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| T |
46726250 |
cattctttaaaaaccattaatagtaaatttttatgaaaaactatgtaatcaatgcattgaaatttgtaacatttgacttttttaa |
46726166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 3354843 - 3354918
Alignment:
| Q |
117 |
ttaaatagtaaatttttatgtaaaaatatgtatttgatgtattgaaaattgtagcatttaactttcttaagaaata |
192 |
Q |
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| T |
3354843 |
ttaaataataaatttttatggaaaaatgtttatttaatgaattgaaaatttaagtacttaacttttttaagaaata |
3354918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 38380598 - 38380523
Alignment:
| Q |
76 |
ggaaatgctaacgaatgctcatccgacattctttaaagaccttaaatagtaaatttttatgtaaaaatatgtattt |
151 |
Q |
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| T |
38380598 |
ggaaatgttaacgaacgctcttggggcattctttaaggactttaaatagtaaatttttatggaaaattatgcattt |
38380523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 5839643 - 5839554
Alignment:
| Q |
100 |
gacattctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatgtattgaaaattgtagcatttaactttcttaagaa |
189 |
Q |
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||||||||| ||| ||||| ||||||| |||||||| ||| | ||||||| ||||||||||| ||| | ||||||| ||| ||||||| |
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| T |
5839643 |
gacattcttcaaacacctttaatagtatgtttttatgaaaatttgtgtatttaatgtattgaaatttgaaacatttaaattttttaagaa |
5839554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 42877355 - 42877293
Alignment:
| Q |
105 |
tctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatgtattgaaaattg |
167 |
Q |
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||||||||||| |||||||||||||||||||| |||| | |||||| || ||||||||||| |
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| T |
42877355 |
tctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattg |
42877293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 5423736 - 5423822
Alignment:
| Q |
100 |
gacattctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatgtattgaaaattgtagcatttaactttcttaa |
186 |
Q |
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|||| ||||||||| ||||||| |||| |||||||| ||| ||||||||| ||| ||||||||||| | |||||||||| |||| |
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| T |
5423736 |
gacactctttaaaggtcttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaactatttaacttttttaa |
5423822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 30529470 - 30529429
Alignment:
| Q |
100 |
gacattctttaaagaccttaaatagtaaatttttatgtaaaa |
141 |
Q |
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|||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
30529470 |
gacattctttaaggactttaaatagtaaatttttatggaaaa |
30529429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 8463218 - 8463182
Alignment:
| Q |
101 |
acattctttaaagaccttaaatagtaaatttttatgt |
137 |
Q |
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|||||||||||| || ||||||||||||||||||||| |
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| T |
8463218 |
acattctttaaaaactttaaatagtaaatttttatgt |
8463182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 36680589 - 36680621
Alignment:
| Q |
103 |
attctttaaagaccttaaatagtaaatttttat |
135 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
36680589 |
attctttaaagaccttaaatagtaactttttat |
36680621 |
T |
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