View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_16 (Length: 414)
Name: NF10982_low_16
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 51 - 398
Target Start/End: Original strand, 6591922 - 6592269
Alignment:
| Q |
51 |
attgtttttaatacttatacttacagaaaaacagtttcgaatcagatgagcattataccttcaaaaaatagttctgaatctccaggctgtgtatatgagg |
150 |
Q |
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| T |
6591922 |
attgtttttaatacttatacttacagaaaaacagtttcgaatcagatgagcattataccttcaaaaaatagttctgaatctccaggctgcgtatatgagg |
6592021 |
T |
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| Q |
151 |
tagatgaataaaaaattcaaccaaattgctagagcgttcatgcaatctaccttgtttgctttcgaagttctctgacagattaatgaatacatcagctaat |
250 |
Q |
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| T |
6592022 |
tagatgaataaaaaattcaaccaaattgctagagcgttcatgcaatctaccttgtttgctttcaaagttctctgacagattaatgaatacatcagctaat |
6592121 |
T |
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| Q |
251 |
tgagaagtgttcttaaagctaatatcctcaaattttccctccatgagaaaatattggagatttggggcatgaatattaagatttttgaaaccatcgcact |
350 |
Q |
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| T |
6592122 |
tgagaagtgttcttaaagctaatatcctcaaattttccctccatgagaaaatattggagatttggggcatgaatattaagatttttgaaaccatcgcact |
6592221 |
T |
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| Q |
351 |
ccatcaatatcaatcgttcaagcagaaggcagctggatattaagtttt |
398 |
Q |
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| T |
6592222 |
ccatcaatatcaatcgttcaagcataaggcagctggatattaagtttt |
6592269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 97 - 374
Target Start/End: Original strand, 6601223 - 6601500
Alignment:
| Q |
97 |
tgagcattataccttcaaaaaatagttctgaatctccaggctgtgtatatgaggtagatgaataaaaaattcaaccaaattgctagagcgttcatgcaat |
196 |
Q |
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| T |
6601223 |
tgagcattataccttcaaaaaatagctttgaatctccagcctttgtatacgaggcaaatgaattaaaaattcgaccagattgctagtgcgtccgtgcaat |
6601322 |
T |
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| Q |
197 |
ctaccttgtttgctttcgaagttctctgacagattaatgaatacatcagctaattgagaagtgttcttaaagctaatatcctcaaattttccctccatga |
296 |
Q |
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| T |
6601323 |
ctaccttgactgctttcaaagttaacatagagaccaatggacaccacagctaattgagaagtgttcttaaagctaatatcctcaaatttacccccgatgt |
6601422 |
T |
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| Q |
297 |
gaaaatattggagatttggggcatgaatattaagatttttgaaaccatcgcactccatcaatatcaatcgttcaagca |
374 |
Q |
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| T |
6601423 |
caaaaaactggagatttggggcatggatattaagatagttgaaaccatcaaagttcatcaatgtcaatcgttcaagca |
6601500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 3362292 - 3362205
Alignment:
| Q |
98 |
gagcattataccttcaaaaaatagttctgaatctccaggctgtgtatatgaggtagatgaataaaaaattcaaccaaattgctagagc |
185 |
Q |
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| T |
3362292 |
gagcattatacctctaaaaaatagtgatgaatctctaggctttgtatgtgaggtagatgaacgaaaaatcgaagcaaattgctagagc |
3362205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 6591841 - 6591876
Alignment:
| Q |
7 |
ggagcagagacaagacagaaagtgaatggattacat |
42 |
Q |
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| T |
6591841 |
ggagcagaaacaagacagaaagtgaatggattacat |
6591876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 3379325 - 3379227
Alignment:
| Q |
100 |
gcattataccttcaaaaaatagttctgaatctccaggctgtgtatatgaggtagatgaataaaaaattcaaccaaattgctagagcgttcatgcaatct |
198 |
Q |
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| T |
3379325 |
gcattatacctttaaaaaataattaccaatctctaggctctgcatgtgaggtcgatgaacgaaaaatttgagcaaattgctagagcgtccgtgcaatct |
3379227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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