View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_17 (Length: 382)
Name: NF10982_low_17
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 37016930 - 37016593
Alignment:
| Q |
17 |
agtatatagtattactcatacttgtgactgagacgatgtcccaatcggcatcaattcgatnnnnnnncaaggaaaatgaatattaatgcctcaaaactca |
116 |
Q |
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| T |
37016930 |
agtatatagtattactcatacttgtgaatgagacgatgtcccaatcggcatcaatttgataaaaaaacaaggaaaatgaatattaatgcctcaaaactca |
37016831 |
T |
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| Q |
117 |
acttatatttcgttttctcttgtttttgttaaaacgacactgatggatcattgtctcagccctaaggacgtggaggaacttttattgtggcagcattaat |
216 |
Q |
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| T |
37016830 |
acttatatttcgttttctcttgtttttgttaaaacgacactgatggatcattgtctcagccctaaggacgtggaggaacttttattgtggcaacattaat |
37016731 |
T |
|
| Q |
217 |
catctttgatattttggttgattttcaagtatcaatctaaagtagactatatgggacacttcaattctccaccctagtggtcgcctatttttcaatccta |
316 |
Q |
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| T |
37016730 |
catctttgatattttggttgattttcaagtatcaatctaaagtagactatatgtgacacttcaattctccaccctagtggtcgcctatttttcaatccta |
37016631 |
T |
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| Q |
317 |
cattcaatgtctactatccttcattcatttcgtgaatg |
354 |
Q |
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| T |
37016630 |
cattcaatgtctactatccttcattcatttcgtgaatg |
37016593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 26991249 - 26991191
Alignment:
| Q |
101 |
aatgcctcaaaactcaacttatatttcgttttctcttgtttttgttaaaacgacactgat |
160 |
Q |
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| T |
26991249 |
aatgcctcaaaactcatcttatgttt-gttttctcttgtttttgttaaatcaacactgat |
26991191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 13837141 - 13837202
Alignment:
| Q |
84 |
caaggaaaatgaatattaatgcctcaaaactcaacttatatttcgttttctcttgtttttgtt |
146 |
Q |
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| T |
13837141 |
caaggaaaacaaatattaatgcctcaaaactcaaattgtattt-gttttctcttggttttgtt |
13837202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 13845571 - 13845624
Alignment:
| Q |
95 |
aatattaatgcctcaaaactcaacttatatttcgttttctcttgtttttgttaaa |
149 |
Q |
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| T |
13845571 |
aatattaaagcctcaaaactcaaattgtatct-gttttctcttgtttttgttaaa |
13845624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 1595060 - 1595021
Alignment:
| Q |
85 |
aaggaaaatgaatattaatgcctcaaaactcaacttatat |
124 |
Q |
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| T |
1595060 |
aaggaaaatgaatattagtgtctcaaaactcaacttatat |
1595021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 26914257 - 26914204
Alignment:
| Q |
95 |
aatattaatgcctcaaaactcaacttatatttcgttttctcttgtttttgttaaa |
149 |
Q |
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||||||||| ||||||||||||||||||| | |||||| |||||||||| ||||| |
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| T |
26914257 |
aatattaattcctcaaaactcaacttata-tacgttttttcttgtttttattaaa |
26914204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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