View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_19 (Length: 363)
Name: NF10982_low_19
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 45928169 - 45927837
Alignment:
| Q |
14 |
acttttctgctgaagattattgtctccatttataaatcgcaaaacacctcaagcataattttgagccttattctagtttgtgtattaaaatgaaaagata |
113 |
Q |
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| T |
45928169 |
acttttctgctgaagattattgtctccttttataaatcgcaaaacacctcaagcataattttgagccttattctagtttgt--attaaaatgaaaagata |
45928072 |
T |
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| Q |
114 |
aaataatatcatgctgggatttgtactattgaatatttgaatgaatgaattcacaagacagtcatcataaccagcttgtagacaaataagaagtaacata |
213 |
Q |
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| T |
45928071 |
aaataatatcatgctgggatttgtactattgaatatttgaatgaatgaattcacaagacagtcatcataaccagcttgtagacaaataagaagtaacata |
45927972 |
T |
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| Q |
214 |
ccaccttcaaaatattgaagaattgcgataaattcaaattattcactttaccctttcgagtttgtgcaacaggttagtcttgaattcacgaacaccactc |
313 |
Q |
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| T |
45927971 |
ccaccttcaaaatattgaagaattgcgataaattcaaattattcactttaccctttcgagtttgtgcaacaggttagtcttgaattcacgaacaccactc |
45927872 |
T |
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| Q |
314 |
acatttgacattggatccattctatgagtcatttc |
348 |
Q |
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| T |
45927871 |
acatttgacattggatccattctatgagccatttc |
45927837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 15807034 - 15806960
Alignment:
| Q |
260 |
tttaccctttcgagtttgtgcaacaggttagtcttgaattcacgaacaccactcacatttgacattggatccatt |
334 |
Q |
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| T |
15807034 |
tttaccttttcgagtttgtgcaataggtaagtcttgaattgacgaacaccacgcccacttgatgttggatccatt |
15806960 |
T |
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