View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_25 (Length: 297)
Name: NF10982_low_25
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 29240897 - 29240623
Alignment:
| Q |
1 |
attgatcgcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttactagttgtcg |
100 |
Q |
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| T |
29240897 |
attgatcgcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttaccagctgtcg |
29240798 |
T |
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| Q |
101 |
agcactttcattcgcctaaaagatatgaagaaataaaaattagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaatgatctatt |
200 |
Q |
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| T |
29240797 |
agcactttcattcgcctaaaagatatgaagaaataaaaattagaatccacctatcta----tctagtaagaacccctcacaaaaataaaaatgatctatt |
29240702 |
T |
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| Q |
201 |
aagattagcaggacaatacgttatgcttttcaatagaactctaaaattgaaatnnnnnnngtaataattacctttcaat |
279 |
Q |
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| T |
29240701 |
aagattagcaggacaatacgttatgcttttcaatagaactctaaaattgaaataaaaaaagtaataattacctttcaat |
29240623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 16828433 - 16828194
Alignment:
| Q |
8 |
gcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttactagttgtcgagcactt |
107 |
Q |
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||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |
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| T |
16828433 |
gcacaaacaagcgtaagtaaaaaagaggacaagaacttacggatctaatgttccactttgcaaatcaagcaaaaaatcctttgccagctgtcgagcactt |
16828334 |
T |
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| Q |
108 |
tcatt-cgcctaaaagatatgaagaaataaaaattagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagatt |
206 |
Q |
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| T |
16828333 |
tcattcctcctaaaatatatgaagaaataaaaattagaatccac----ctatttatcgagtaagcaccccccataaaaataaaaatgatccattaagatt |
16828238 |
T |
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| Q |
207 |
agcaggacaatacgttatgcttttcaatagaactctaaaattga |
250 |
Q |
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| T |
16828237 |
aacaggacaacacgttatgtttttcaatagaactgtaaaattga |
16828194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 846142 - 846199
Alignment:
| Q |
32 |
gaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatccttt |
89 |
Q |
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|||||||| ||| |||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
846142 |
gaggacaaaaacatacatgtctagtgttccactttgcaaatcaagcaaaaactccttt |
846199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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