View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_26 (Length: 291)
Name: NF10982_low_26
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 45662179 - 45661907
Alignment:
| Q |
1 |
gtaaacgacacgattcaaccgcgtaaaacaacataataaaagaagtgatgatgaaaatgacggtttttaagaggttttcttgacttagatcttgttgtct |
100 |
Q |
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| T |
45662179 |
gtaaacgacacgattcaaccgcgtaaaacaacataataaaagaagtaatgatgaaaaggaaggtttttaagaggttttcttgacttagatcttgttgtct |
45662080 |
T |
|
| Q |
101 |
tatcaactgatatatttatattggtaaggcaacaaccttttggtattcagatatgccacatagttttttacaattccttgttgagtttttaagacaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| |||| |
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| T |
45662079 |
tatcaactgatatatttatattggtaaggcaacaaccttttggttttcagatatgccacgtagttttttacagttccttggtaagtttttaagatgagtg |
45661980 |
T |
|
| Q |
201 |
atgttaaaatatcttccctctatcatcactcatcttatcttataaccaacatgctcataaaaacatccaacaag |
274 |
Q |
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| T |
45661979 |
atgttaaaataccttccctctatcatcactcatcttatcttataaccaacatgctcataaaaa-atccaacaag |
45661907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49442361 - 49442416
Alignment:
| Q |
1 |
gtaaacgacacgattcaaccgcgtaaaacaacataataaaagaagtgatgatgaaa |
56 |
Q |
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| T |
49442361 |
gtaaacgacataattcaacaacgtaaaacaacataataagagaagtggtgatgaaa |
49442416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15499667 - 15499722
Alignment:
| Q |
1 |
gtaaacgacacgattcaaccgcgtaaaacaacataataaaagaagtgatgatgaaa |
56 |
Q |
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| T |
15499667 |
gtaaacgacacaattcaacaacgtaaaacaacataataagagaagtgatgatgaaa |
15499722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25879790 - 25879845
Alignment:
| Q |
1 |
gtaaacgacacgattcaaccgcgtaaaacaacataataaaagaagtgatgatgaaa |
56 |
Q |
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| T |
25879790 |
gtaaacgacataattcaacggcgtaaagcaacataataagagaagtgatgatgaaa |
25879845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 25879939 - 25880015
Alignment:
| Q |
132 |
acaaccttttggtattcagatatgccacatagttttttacaattccttgttgagtttttaagacaagtgatgttaaa |
208 |
Q |
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| T |
25879939 |
acaacctcttggtatgcagatttgccgcataatttttcgcaattctttgttgagtttttaagatgagtgatgataaa |
25880015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 38175745 - 38175633
Alignment:
| Q |
24 |
taaaacaacataataaaagaagtgatgatgaaaatgacggt-ttttaagaggtt-ttcttgacttagatcttgttgtcttatcaactgatatatttatat |
121 |
Q |
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||||||||||||||||||||||||| ||||||| || ||| || |||||||| || |||| |||||||||||||||| ||||||| |||||| || |
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| T |
38175745 |
taaaacaacataataaaagaagtgaggatgaaagggaaggtgttccaagaggttgtttttgagctagatcttgttgtctttccaactgacatatttctaa |
38175646 |
T |
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| Q |
122 |
tggtaaggcaaca |
134 |
Q |
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||| ||| ||||| |
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| T |
38175645 |
tggcaagacaaca |
38175633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13909791 - 13909735
Alignment:
| Q |
1 |
gtaaacgacacgattcaaccgcgtaaa-acaacataataaaagaagtgatgatgaaa |
56 |
Q |
| |
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|||||||||| |||||||| ||||||| |||||||||||| ||||||| |||||||| |
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| T |
13909791 |
gtaaacgacatgattcaacagcgtaaagacaacataataagagaagtggtgatgaaa |
13909735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 7631586 - 7631547
Alignment:
| Q |
13 |
attcaaccgcgtaaaacaacataataaaagaagtgatgat |
52 |
Q |
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||||||| ||||||||||||||||||| |||||||||||| |
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| T |
7631586 |
attcaacggcgtaaaacaacataataacagaagtgatgat |
7631547 |
T |
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