View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10982_low_27 (Length: 278)

Name: NF10982_low_27
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10982_low_27
NF10982_low_27
[»] chr8 (2 HSPs)
chr8 (1-228)||(15051547-15051770)
chr8 (13-117)||(24542704-24542808)
[»] chr2 (4 HSPs)
chr2 (1-217)||(44686046-44686261)
chr2 (1-129)||(27648385-27648511)
chr2 (25-228)||(26690469-26690669)
chr2 (1-129)||(36338909-36339036)
[»] chr3 (4 HSPs)
chr3 (10-225)||(24734169-24734383)
chr3 (13-129)||(53837503-53837619)
chr3 (3-129)||(53833905-53834031)
chr3 (1-54)||(3083800-3083853)
[»] chr5 (6 HSPs)
chr5 (1-118)||(33827529-33827646)
chr5 (15-96)||(11128878-11128959)
chr5 (73-226)||(41360529-41360681)
chr5 (1-88)||(33544933-33545020)
chr5 (12-97)||(34153983-34154068)
chr5 (1-45)||(17895663-17895707)
[»] chr1 (5 HSPs)
chr1 (1-129)||(47833841-47833969)
chr1 (16-229)||(25588742-25588955)
chr1 (193-228)||(6055023-6055058)
chr1 (10-55)||(2079111-2079156)
chr1 (69-129)||(26310398-26310456)
[»] chr6 (5 HSPs)
chr6 (1-121)||(353038-353158)
chr6 (29-221)||(31405545-31405736)
chr6 (13-194)||(14802823-14803009)
chr6 (1-165)||(12273623-12273786)
chr6 (10-88)||(31984838-31984916)
[»] scaffold0210 (1 HSPs)
scaffold0210 (143-234)||(15162-15252)
[»] chr4 (2 HSPs)
chr4 (76-129)||(54572967-54573020)
chr4 (233-265)||(42564170-42564202)
[»] chr7 (2 HSPs)
chr7 (1-117)||(38787105-38787219)
chr7 (1-45)||(4648282-4648326)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15051547 - 15051770
Alignment:
Q  1 gcaagaagcgactgttgtatcctggaga-gtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgctt 99  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||| ||| | | ||||||| ||||||||||||||||| |||| ||| |    
T  15051547 gcaagaagcgactgtt-tattctggagaagtattagctatgagatctatcgcatcggataacttatccgggatggcgaaatactcttaaacccaatgcat 15051645  T
Q  100 cgtacacgcctcagtcaataatggataagtgttttgttctctctttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattttatta 199  Q
     |  |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| || ||||||||||||    
T  15051646 tg--cacgtctcagtcaataatcgataagtgttttgttctctttttaatttcatgaagagtcatatttaattgtgtttatatttgtgtttgattttatta 15051743  T
Q  200 tttataatgattctatgtctaatttttcc 228  Q
    |||||||||||||  ||||||||||||||    
T  15051744 tttataatgattc--tgtctaatttttcc 15051770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 24542704 - 24542808
Alignment:
Q  13 tgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttcgtacacgcctca 112  Q
    |||||||| |||||||||| ||||||||||| | | |||||| |||||| ||||||   |||| ||||||||||||| ||| ||| |  | |||||||||    
T  24542704 tgttgtattctggagagtactagctatgagatcaaccgcatcggatgatccatccgtaatggcaaaatactcttaagtccaatgcattttgcacgcctca 24542803  T
Q  113 gtcaa 117  Q
    |||||    
T  24542804 gtcaa 24542808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 44686261 - 44686046
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| |||||||||||||||||||||||||||| |     
T  44686261 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcggataacttatccgaggtggcgaaatactcttaagcccagtgcatt 44686162  T
Q  101 gtacacgcctcagtcaataatggataagtgttttgttctctctttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattttattat 200  Q
     | || ||||||||||||||| || |||| || | |||||| |||||||| ||||| | ||||||||| |||| ||||||||| || |||| ||||| |     
T  44686161 ttgcatgcctcagtcaataatcgagaagttttctattctctatttaatttgatgaacagtcatatttacttgttcttatatttgtgtttga-tttatcaa 44686063  T
Q  201 ttataatgattctatgt 217  Q
     ||||||||||||||||    
T  44686062 atataatgattctatgt 44686046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 27648385 - 27648511
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||  |||||||||||||| ||||| ||| ||| |     
T  27648385 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcggataatttatccaaggtggcgaaatacttttaagtccaatgcat- 27648483  T
Q  101 gtacacgcctcagtcaataatggataagt 129  Q
     | ||||||||| |||||||| |||||||    
T  27648484 -tccacgcctcaatcaataatcgataagt 27648511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 26690669 - 26690469
Alignment:
Q  25 gagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttcgtacacgcctcagtcaataatgga 124  Q
    ||||||| ||||||||||||| |  ||||| ||| |   ||||  ||||| |||||||||||||| ||| ||  |  ||||||||||| |||||||| ||    
T  26690669 gagagtactagctatgagaccaactgcatcggataacctatccatggtggtgaaatactcttaagtccaatgtat--tacacgcctcattcaataatcga 26690572  T
Q  125 taagtgttttgttctctctttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattttattatttataatgattctatgtctaattt 224  Q
    ||||| |||| |||| | |||||||| ||||||||||||||||| |||||| ||||||| || |||| |||||||||| |||||||| ||||||||||||    
T  26690571 taagttttttattctttatttaatttgatgaagaatcatatttatttgtgcatatatttgtgtttga-tttattatttgtaatgattatatgtctaattt 26690473  T
Q  225 ttcc 228  Q
    ||||    
T  26690472 ttcc 26690469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36339036 - 36338909
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    |||||||  |||||||||||||||||||||| |||| | |||| |||  ||||| | | |   || || | ||||||||||||||||| || ||||||||    
T  36339036 gcaagaactgactgttgtatcctggagagtactagccacgagatctactgcatcgggtaacctattcgagatggcgaaatactcttaaacc-agtgcttc 36338938  T
Q  101 gtacacgcctcagtcaataatggataagt 129  Q
    || |||||||||||||||| | |||||||    
T  36338937 gtgcacgcctcagtcaatattcgataagt 36338909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 24734383 - 24734169
Alignment:
Q  10 gactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttcgtacacgcc 109  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| |   ||| ||||||||||| ||||||||||  | ||||||||| ||| ||    
T  24734383 gactgttgtatcctggagagtattagctatgagacctactgcatcagataacctatctggggtggcgaagtactcttaagttcggtgcttcgtgcacacc 24734284  T
Q  110 tcagtcaataatggataagtgttttgttctctctttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattttattatttataatga 209  Q
    |||||||||||| ||||||| || | |||||| |||||||| ||||||| | ||||||  |||||||||||||| || |||| ||||||||||| |||||    
T  24734283 tcagtcaataattgataagttttctattctctatttaatttgatgaagagttatatttgcttgtgcttatatttgtgtttga-tttattatttaaaatga 24734185  T
Q  210 ttctatgtctaatttt 225  Q
    ||||||||||||||||    
T  24734184 ttctatgtctaatttt 24734169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 53837619 - 53837503
Alignment:
Q  13 tgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttcgtacacgcctca 112  Q
    |||||||||||| ||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| | |||| | |||||||||    
T  53837619 tgttgtatcctgcagagtattaactatgagatctatcgcatcggatgattcatccgaggtggcgaaatactcttaagcccaatacttcatgcacgcctca 53837520  T
Q  113 gtcaataatggataagt 129  Q
    ||||||||| |||||||    
T  53837519 gtcaataatcgataagt 53837503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 53834031 - 53833905
Alignment:
Q  3 aagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttcgt 102  Q
    |||||| || |||||||||||| ||||||||||||||||||||||||||||| | | ||| ||||||| |||| |||||||||| ||||||||||||| |    
T  53834031 aagaagtgattgttgtatcctgcagagtattagctatgagacctatcgcatcgggttatttatccgggatggcaaaatactcttcagcccagtgcttcat 53833932  T
Q  103 acacgcctcagtcaataatggataagt 129  Q
     |||||||||  ||||||| |||||||    
T  53833931 gcacgcctcaaccaataatcgataagt 53833905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3083800 - 3083853
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatc 54  Q
    |||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||    
T  3083800 gcaagaagtgactgctgtattctgaagagtattagctatgagacctatcgcatc 3083853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33827529 - 33827646
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  33827529 gcaagaagcgattgttgtatcctggagagtattatctatgagacctatcgcatcaggtgattcatccggggtggcaaaatactcttaagcccagtgcttc 33827628  T
Q  101 gtacacgcctcagtcaat 118  Q
    || |||||||||||||||    
T  33827629 gtgcacgcctcagtcaat 33827646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 11128959 - 11128878
Alignment:
Q  15 ttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtg 96  Q
    |||||||||||||| || ||||||||||||| | |||||| |||||| |||||| |||||| ||||||||||||| ||||||    
T  11128959 ttgtatcctggagaatactagctatgagaccaaccgcatcggatgatccatccgtggtggcaaaatactcttaagtccagtg 11128878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 41360529 - 41360681
Alignment:
Q  73 ggcgaaatactcttaagcccagtgcttcgtacacgcctcagtcaataatg--gataagtgttttgttctctctttaatttcatgaagaatcatatttaat 170  Q
    ||||||||||||||||||||| ||| | |  ||||||| |||||||||    ||||||| || | |||| | |||||| | ||||||| ||||||||| |    
T  41360529 ggcgaaatactcttaagcccattgcattg--cacgcctgagtcaataacaatgataagttttctattctttgtttaatgtgatgaagagtcatatttatt 41360626  T
Q  171 tgtgcttatatttatggttgattttattatttataatgattctatgtctaattttt 226  Q
    | ||||||||||| || |||| ||||||||||||||  ||||||| | ||||||||    
T  41360627 tatgcttatatttgtgtttga-tttattatttataagaattctatatttaattttt 41360681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33545020 - 33544933
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaa 88  Q
    |||||| | ||||| |||||| ||||||||| ||||||||||||| | | |||||| |||| |||||  |||| | ||||||||||||    
T  33545020 gcaagatgtgactgctgtatcatggagagtactagctatgagaccaaccacatcaggtgatccatccatggtgcctaaatactcttaa 33544933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 34154068 - 34153983
Alignment:
Q  12 ctgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgc 97  Q
    |||||||||||||||||| | ||||| |||| || |  ||||||| | ||| | | | ||||||||||| ||||||||||||||||    
T  34154068 ctgttgtatcctggagagcactagctttgaggccaactgcatcaggtcattgacctgtggtggcgaaatgctcttaagcccagtgc 34153983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17895663 - 17895707
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacc 45  Q
    |||||||| || ||||||||||||||||||| ||||| |||||||    
T  17895663 gcaagaagtgattgttgtatcctggagagtactagctgtgagacc 17895707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 47833841 - 47833969
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  47833841 gcaagaagcgactgttgtattctggagagtattagctatgagacctattgcatcggatgattcatccggggtggcgaaatactcttaagcccaatgcttc 47833940  T
Q  101 gtacacgcctcagtcaataatggataagt 129  Q
     | || ||||||||||||||| |||||||    
T  47833941 atgcatgcctcagtcaataatcgataagt 47833969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 25588742 - 25588955
Alignment:
Q  16 tgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttcgtacacgcctcagtc 115  Q
    ||||| |||||||||| ||||||||||| ||| || |||  || ||  || || |||||||||||||||||||||  ||| ||  || ||| ||| ||||    
T  25588742 tgtattctggagagtactagctatgagatctaccgtatcgaataatctattcgtggtggcgaaatactcttaagcaaagtactatgtgcacaccttagtc 25588841  T
Q  116 aataatggataagtgttttgttctctctttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattttattatttataatgattctat 215  Q
    |||||| ||||||| || | |||||| |||||||| ||||||||||||||||| ||||||| |||||| |  || |||||||  |||||||| |||||||    
T  25588842 aataatcgataagttttctattctctatttaatttgatgaagaatcatatttatttgtgctaatatttttctttaattttatactttataataattctat 25588941  T
Q  216 gtctaatttttcct 229  Q
    ||||||||||||||    
T  25588942 gtctaatttttcct 25588955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 6055058 - 6055023
Alignment:
Q  193 tttattatttataatgattctatgtctaatttttcc 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  6055058 tttattatttataatgattctatgtctaatttttcc 6055023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 2079156 - 2079111
Alignment:
Q  10 gactgttgtatcctggagagtattagctatgagacctatcgcatca 55  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||    
T  2079156 gactgttgtatcctggagaatattagctatgagaccaaccgcatca 2079111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 26310456 - 26310398
Alignment:
Q  69 gggtggcgaaatactcttaagcccagtgcttcgtacacgcctcagtcaataatggataagt 129  Q
    ||||||| ||||||||||||||| ||||| |||  || ||||||||||||||| |||||||    
T  26310456 gggtggcaaaatactcttaagcctagtgcatcg--caagcctcagtcaataatcgataagt 26310398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 353038 - 353158
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    |||||||| || | ||||||||||||||||||||||| |||||||||||||||| ||| ||  || ||||||||||||||||||||||||||||||||||    
T  353038 gcaagaagtgattattgtatcctggagagtattagctgtgagacctatcgcatcggataatctattcggggtggcgaaatactcttaagcccagtgcttc 353137  T
Q  101 gtacacgcctcagtcaataat 121  Q
    || ||||||||||||||||||    
T  353138 gtgcacgcctcagtcaataat 353158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 31405736 - 31405545
Alignment:
Q  29 gtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttcgtacacgcctcagtcaataatggataag 128  Q
    |||||||||||||||||||  ||||| ||| ||  || ||| |||||||||||||||||||| || ||| |  | |||| |||| |||||||| |||||     
T  31405736 gtattagctatgagacctactgcatcggataatctattcggagtggcgaaatactcttaagctcaatgcattttgcacgtctcactcaataatcgataaa 31405637  T
Q  129 tgttttgttctctctttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattttattatttataatgattctatgtctaa 221  Q
    | || | |||||| |||||||| |||||||||| ||| || |||||||||||||| | |||   ||||||| ||||||| |||||||||||||    
T  31405636 ttttctattctctatttaatttgatgaagaatcgtatatatttgtgcttatatttgt-gttctatttattacttataataattctatgtctaa 31405545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 14802823 - 14803009
Alignment:
Q  13 tgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaata----ctcttaagcccagtgcttcgtacacgc 108  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  || | | ||  | |||||| |||||    ||||||| ||||||| || || || ||    
T  14802823 tgttgtatcctggagagtattagctatcagatctatcgcatcgaataacttatttgaggtggcaaaatatatactcttaaacccagtgttttgtgcatgc 14802922  T
Q  109 ctcagtcaataatggataagtgttt-tgttctctctttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattt 194  Q
    ||||| ||||||| ||||||| ||| | |||||| |||||||  ||||||||||||||||  |||||||||||||| || |||||||    
T  14802923 ctcagccaataatcgataagtttttctattctctatttaattcaatgaagaatcatatttgtttgtgcttatatttgtgtttgattt 14803009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 12273623 - 12273786
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    |||||||| || |||||||||||  ||||||||| ||||||||||||||||||  | |||| |||||||| |||| |||||||||||||||| |||| |     
T  12273623 gcaagaagtgattgttgtatcctaaagagtattaactatgagacctatcgcattgggtgatccatccgggatggcaaaatactcttaagcccggtgcat- 12273721  T
Q  101 gtacacgcctcagtcaata--atggataagtgttttgttctctctttaatttcatgaagaatcatat 165  Q
     | ||||||||| ||||||  || ||||||| || | |||||| |||||||| ||||||| ||||||    
T  12273722 -tgcacgcctcaatcaataatatcgataagt-ttctattctctatttaatttgatgaagagtcatat 12273786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 31984838 - 31984916
Alignment:
Q  10 gactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaa 88  Q
    ||||||||||||||| || | | |||||||||||||   | |||||| ||||||||| | ||||| |||||||||||||    
T  31984838 gactgttgtatcctgtagggcactagctatgagaccatccacatcaggtgattcatctgtggtggagaaatactcttaa 31984916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 15162 - 15252
Alignment:
Q  143 tttaatttcatgaagaatcatatttaattgtgcttatatttatggttgattttattatttataatgattctatgtctaatttttcctccaat 234  Q
    ||||| || ||||||| ||||||||||||||| |||||| | |||||||||| |||||||||||| |||||||||||||||| |||| ||||    
T  15162 tttaacttgatgaagagtcatatttaattgtgtttatatctgtggttgattt-attatttataataattctatgtctaatttctcctacaat 15252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 54572967 - 54573020
Alignment:
Q  76 gaaatactcttaagcccagtgcttcgtacacgcctcagtcaataatggataagt 129  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  54572967 gaaatactcttaagtccagtgcttcgtgcacgcctcagtcaataatcgataagt 54573020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 42564170 - 42564202
Alignment:
Q  233 atggagcctccttatatcatcctccattcatct 265  Q
    |||||||||||||||||||||||||||||||||    
T  42564170 atggagcctccttatatcatcctccattcatct 42564202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38787105 - 38787219
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacctatcgcatcagatgattcatccggggtggcgaaatactcttaagcccagtgcttc 100  Q
    |||||| | |||||||||||||||||||||| || ||||||  ||||  ||||| ||| ||  |||| ||||| ||||||||||||||| ||||||| |     
T  38787105 gcaagatgtgactgttgtatcctggagagtactaactatga--cctactgcatcggataatcaatccagggtgacgaaatactcttaagtccagtgcatt 38787202  T
Q  101 gtacacgcctcagtcaa 117  Q
     | ||||||||||||||    
T  38787203 ttgcacgcctcagtcaa 38787219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4648326 - 4648282
Alignment:
Q  1 gcaagaagcgactgttgtatcctggagagtattagctatgagacc 45  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||    
T  4648326 gcaagaagtgactgttgtatcctgaagagtactagctatgagacc 4648282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University