View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_3 (Length: 586)
Name: NF10982_low_3
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 71 - 586
Target Start/End: Complemental strand, 45928708 - 45928186
Alignment:
| Q |
71 |
ttggggcagtgctgatgcataatagacagcatattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
170 |
Q |
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| T |
45928708 |
ttggggcggtgctgatgcataatagacagcctattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
45928609 |
T |
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| Q |
171 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
270 |
Q |
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| T |
45928608 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
45928509 |
T |
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| Q |
271 |
gttgattcacattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcataatctttggacatctcgagcctata |
370 |
Q |
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| T |
45928508 |
gttgattctcattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcataatctttggacatctcgagcctata |
45928409 |
T |
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| Q |
371 |
ttagtattttatttatttattttgcctttcnnnnnnnnnngttttaattttggtttgttaacttgagttggttgacaattattacatttcaactttgtat |
470 |
Q |
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| T |
45928408 |
ttagtattttatttatttattttgccttt-aaaaaaaaaagttttaattttggtttgttaacttgagttggttgacaattattacatttcaactttgtat |
45928310 |
T |
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| Q |
471 |
atagctcagttttgataatgaatttcccaattttcttttactcttcc--------tcgacatccagttcaacatatttaacgaacattcttagctttgtg |
562 |
Q |
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| T |
45928309 |
atagctcagttttgataatgaatttcccaattttcttttactcttcctctgtatttcgacattcagttcaacatatttaacgaacattcttagctttgtg |
45928210 |
T |
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| Q |
563 |
gtgatctaaattcctatatgcatc |
586 |
Q |
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| T |
45928209 |
gtgatctaaattcctatatgcatc |
45928186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 45934251 - 45934199
Alignment:
| Q |
12 |
cacagaggctaaatgcagttgcatgataatgaaatcacccaatgcagtccgaa |
64 |
Q |
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| T |
45934251 |
cacagaggctaaatgcagttgcatgataatgaaatcacccaaggcagtccgaa |
45934199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 15816485 - 15816433
Alignment:
| Q |
12 |
cacagaggctaaatgcagttgcatgataatgaaatcacccaatgcagtccgaa |
64 |
Q |
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| T |
15816485 |
cacagaggctaattgcagttgcatgataatgaaatcacccaaggcagtccgaa |
15816433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 48302727 - 48302698
Alignment:
| Q |
411 |
gttttaattttggtttgttaacttgagttg |
440 |
Q |
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| T |
48302727 |
gttttaattttggtttgttaacttgagttg |
48302698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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