View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_31 (Length: 260)
Name: NF10982_low_31
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 53501156 - 53500911
Alignment:
| Q |
1 |
atcaatcggaaggatcaaaatttccaacactggtattcagaggtacctacatttcttttctacttttcgtggtcgaactagctactttaaacctaagtta |
100 |
Q |
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| T |
53501156 |
atcaatcggaaggatcaaaatttccaacactggtattcagaggtacctacatttcttttctacttttcgtggtcgaactagctactttaaacctaagtta |
53501057 |
T |
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| Q |
101 |
acctattgctctgacaggttgtttttagtgcgaaattgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatggga |
200 |
Q |
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| T |
53501056 |
acctattgctctgacaggttgtttttagtgcgaaattgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatggga |
53500957 |
T |
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| Q |
201 |
gactttgcaagtatgtttctcaacgatttgaatgcttcttttcttt |
246 |
Q |
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| T |
53500956 |
gactttgcaagtatgtttctcaacgatttgaatgcttcttttcttt |
53500911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 53493250 - 53493121
Alignment:
| Q |
105 |
attgctctgacaggttgtttttagtgcgaaattgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagact |
204 |
Q |
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| T |
53493250 |
attgctctgacaggttgttgt-agtgcggaattgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagact |
53493152 |
T |
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| Q |
205 |
ttgcaagtatgtttctcaacgatttgaatgc |
235 |
Q |
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| T |
53493151 |
ttgcaagtatgtttctcaatgatttgaatgc |
53493121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 16072408 - 16072278
Alignment:
| Q |
105 |
attgctctgacaggttgtttttagtgcgaaattgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagact |
204 |
Q |
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| T |
16072408 |
attgctctaataggttgtcgctagtgcggaattgattgagcactatgatatttctggtttatatattctgagaccatctgcagtagagatatgggagact |
16072309 |
T |
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| Q |
205 |
ttgcaagtatgtttctcaacgatttgaatgc |
235 |
Q |
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| T |
16072308 |
ttgcaagtatgtttctcaacgatttgaatgc |
16072278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 45352476 - 45352557
Alignment:
| Q |
137 |
tgattgagcactatgatatttctggtttatatattctgagaccatcggcagtggaaatatgggagactttgcaagtatgttt |
218 |
Q |
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|||||||| |||||||||||||||||| |||||||| ||||| | | || ||| || ||||||| | ||||||||||||| |
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| T |
45352476 |
tgattgagtactatgatatttctggttgctatattctcagaccttggtcaatggctatttgggagattatgcaagtatgttt |
45352557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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