View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_32 (Length: 259)
Name: NF10982_low_32
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 39952722 - 39952927
Alignment:
| Q |
4 |
ttagagcaaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaa |
103 |
Q |
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| T |
39952722 |
ttagagcaaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttgtgatggttaacatcagaaaccatagcttgcaa |
39952821 |
T |
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| Q |
104 |
catatttgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgagaaagctagcatctaact |
203 |
Q |
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| T |
39952822 |
catatttgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgtgaaagctagcatctaact |
39952921 |
T |
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| Q |
204 |
taacta |
209 |
Q |
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|||||| |
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| T |
39952922 |
taacta |
39952927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 248
Target Start/End: Complemental strand, 50416993 - 50416775
Alignment:
| Q |
33 |
tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat |
132 |
Q |
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|||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| || |
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| T |
50416993 |
tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat |
50416894 |
T |
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| Q |
133 |
atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagctagcatctaacttaactannnnnnnnncattcgcagag |
229 |
Q |
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||||||||||| ||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
50416893 |
atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagctagcatctaacttaactatttttttttccttcgcagag |
50416794 |
T |
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| Q |
230 |
ttattctttttcatctctg |
248 |
Q |
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|||||||||||||| |||| |
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| T |
50416793 |
ttattctttttcatttctg |
50416775 |
T |
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