View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10982_low_34 (Length: 240)

Name: NF10982_low_34
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10982_low_34
NF10982_low_34
[»] chr8 (2 HSPs)
chr8 (17-240)||(38245816-38246039)
chr8 (21-155)||(24788420-24788554)
[»] chr2 (2 HSPs)
chr2 (31-216)||(38624173-38624358)
chr2 (174-240)||(40368237-40368303)
[»] chr6 (4 HSPs)
chr6 (19-237)||(19229259-19229483)
chr6 (22-143)||(29071265-29071386)
chr6 (22-143)||(29103838-29103959)
chr6 (96-155)||(12691888-12691947)
[»] chr7 (4 HSPs)
chr7 (22-159)||(13807862-13807999)
chr7 (32-86)||(13760959-13761013)
chr7 (32-121)||(26159689-26159778)
chr7 (189-240)||(6803034-6803085)
[»] chr1 (3 HSPs)
chr1 (32-155)||(14207355-14207478)
chr1 (63-141)||(46269074-46269152)
chr1 (114-159)||(39037889-39037934)
[»] chr4 (3 HSPs)
chr4 (19-93)||(18992037-18992111)
chr4 (31-123)||(41147925-41148017)
chr4 (63-119)||(7704568-7704624)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 38246039 - 38245816
Alignment:
Q  17 acccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatgg 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  38246039 acccactccttttactctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactagtggcttttgcttatagttatcatgaccggtgg 38245940  T
Q  117 aaacaccacattctttgcatgggtgttcttctgtaatttatttatttttgtctctcaatggtgctttaattgtggcaccttgactgtgtaaatatttttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  38245939 aaacaccacattctttgcatgggtgttcttctgtaatttatttattttcgtctctgaatggtgctttaattgtggcaccttgattgtgtaaatatttttt 38245840  T
Q  217 ggtatgtctccttttgcacacctt 240  Q
    | ||||||||||||||||||||||    
T  38245839 gatatgtctccttttgcacacctt 38245816  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 24788554 - 24788420
Alignment:
Q  21 actccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaac 120  Q
    ||||| ||| |||||||||||||||||||||| |||||||| |||||||||||||| |||| |||  |||||| ||||||||| || ||| | |||| ||    
T  24788554 actccctttactctcattgaaaaagtaaagttgaattcattcttatggttgaaatcgaaacaggtaacttttgtttatagttaccacgactggtggagac 24788455  T
Q  121 accacattctttgcatgggtgttcttctgtaattt 155  Q
    | | ||||||||| |||| ||||||| ||||||||    
T  24788454 aacccattctttgtatggttgttcttatgtaattt 24788420  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 38624173 - 38624358
Alignment:
Q  31 ctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaacaccacattct 130  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||| |  ||| | ||   ||||| ||||||    
T  38624173 ctctcattgaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggctcttgcttatagttaccgggactggtgacgacaccccattct 38624272  T
Q  131 ttgcatgggtgttcttctgtaatttatttatttttgtctctcaatggtgctttaattgtggcaccttgactgtgtaaatatttttt 216  Q
    ||  ||| || ||||| |||||||||||||| ||||||| |   ||||||||||||||||||||||||||| | ||||||||||||    
T  38624273 ttatatgagtattcttttgtaatttatttatctttgtctttggctggtgctttaattgtggcaccttgactctataaatatttttt 38624358  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 40368303 - 40368237
Alignment:
Q  174 atggtgctttaattgtggcaccttgactgtgtaaatattttttggtatgtctccttttgcacacctt 240  Q
    |||||||| ||| | ||||||||| ||| ||||||||||||| | | | ||||||||||||||||||    
T  40368303 atggtgctctaagtttggcaccttaactctgtaaatatttttcgatgtttctccttttgcacacctt 40368237  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 19229483 - 19229259
Alignment:
Q  19 ccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaa 118  Q
    ||||||||||  ||||| || |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||| || ||||| || ||    
T  19229483 ccactcctttcactctcgttaaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggcttttgcttatagttaccacgaccggtgaaa 19229384  T
Q  119 acaccacattctttgcatgg--gtgttcttctg---taattta-tttatttttgtctctcaatggtgctttaattgtggcaccttgactgtgtaaatatt 212  Q
    ||||| |||| |||  ||||  |||||||| ||   ||||||| |||||| || | | |  |||||||| ||||||||||||||||||| ||||||||||    
T  19229383 acaccccattttttatatgggtgtgttcttatgtaataatttattttattattatgtttggatggtgctctaattgtggcaccttgactttgtaaatatt 19229284  T
Q  213 ttttggtatgtctccttttgcacac 237  Q
    ||| ||| |  ||||||||||||||    
T  19229283 tttcggtgtacctccttttgcacac 19229259  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 29071386 - 29071265
Alignment:
Q  22 ctccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 121  Q
    |||||||| |||||||||||||||| ||  || ||| |||  | ||||||||||| |||| ||||||||||| ||||| |||||| ||  | ||||||||    
T  29071386 ctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacgattggtggaaaca 29071287  T
Q  122 ccacattctttgcatgggtgtt 143  Q
    || ||||| ||| |||| ||||    
T  29071286 ccccattcattgtatggatgtt 29071265  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 29103959 - 29103838
Alignment:
Q  22 ctccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 121  Q
    |||||||| |||||||||||||||| ||  || ||| |||  | ||||||||||| |||| ||||||||||| ||||| |||||| ||  | ||||||||    
T  29103959 ctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacgattggtggaaaca 29103860  T
Q  122 ccacattctttgcatgggtgtt 143  Q
    || ||||| ||| |||| ||||    
T  29103859 ccccattcattgtatggatgtt 29103838  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 12691947 - 12691888
Alignment:
Q  96 tatagttatcatgaccgatggaaaca-ccacattctttgcatgggtgttcttctgtaattt 155  Q
    ||||||||||||||||| |||||||| |||| | ||||| |||||||||||| ||||||||    
T  12691947 tatagttatcatgaccggtggaaacatccac-tcctttgtatgggtgttcttgtgtaattt 12691888  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 13807999 - 13807862
Alignment:
Q  22 ctccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 121  Q
    |||||| | ||||||||||| |||||||||| ||||| || |||||||||||||||||||  ||||| || |||||||||||||||||  | ||||||||    
T  13807999 ctccttcttctctcattgaacaagtaaagttaaattcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaaca 13807900  T
Q  122 ccacattctttgcatgggtgttcttctgtaatttattt 159  Q
    || ||||||||| |||||||||  | ||||||||||||    
T  13807899 cctcattctttgtatgggtgttagtttgtaatttattt 13807862  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13760959 - 13761013
Alignment:
Q  32 tctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtg 86  Q
    ||||||||||||||| ||| | |||||||| ||||||||||||||||||| ||||    
T  13760959 tctcattgaaaaagttaagctaaattcattcttatggttgaaatcaaaacaggtg 13761013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 26159689 - 26159778
Alignment:
Q  32 tctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 121  Q
    ||||||||||||||| ||| | |||||||| || |||||||||||| |||  ||| | |||  |||||||||||||||| | ||||||||    
T  26159689 tctcattgaaaaagttaagctaaattcattcttgtggttgaaatcataacatgtgtcatttagttatagttatcatgactggtggaaaca 26159778  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 6803034 - 6803085
Alignment:
Q  189 tggcaccttgactgtgtaaatattttttggtatgtctccttttgcacacctt 240  Q
    ||||||||| ||| ||||||||||||| ||| | ||||||||||||||||||    
T  6803034 tggcaccttaactttgtaaatatttttcggtgtttctccttttgcacacctt 6803085  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 14207355 - 14207478
Alignment:
Q  32 tctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaacaccacattctt 131  Q
    |||||||||||||||||||||  |||| || || ||||||||||| |||| || |||||||||||| | |||||| ||||| |||||||||  ||| | |    
T  14207355 tctcattgaaaaagtaaagtttcattccttcttttggttgaaatctaaacaggcggcttttgcttacacttatcacgaccggtggaaacactccatccct 14207454  T
Q  132 tgcatgggtgttcttctgtaattt 155  Q
    || ||||||||  || ||||||||    
T  14207455 tgtatgggtgtatttttgtaattt 14207478  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 46269152 - 46269074
Alignment:
Q  63 ttatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaacaccacattctttgcatgggtg 141  Q
    |||||||||| ||| |||| ||||||||||||||||  |||||||||  | ||||||||||  |||| ||| |||||||    
T  46269152 ttatggttgagatctaaacaggtggcttttgcttattcttatcatgattggtggaaacaccctattcattgtatgggtg 46269074  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 39037934 - 39037889
Alignment:
Q  114 tggaaacaccacattctttgcatgggtgttcttctgtaatttattt 159  Q
    ||||| |||| ||||||||| ||||||||||||||||| |||||||    
T  39037934 tggaatcaccccattctttgaatgggtgttcttctgtagtttattt 39037889  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 18992037 - 18992111
Alignment:
Q  19 ccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttg 93  Q
    |||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||||| |||  |||||| ||||    
T  18992037 ccactcattttcttctcatcgaaaaagtaaagttaaattcattcttatggttgaaatctaaataggtggcctttg 18992111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 41147925 - 41148017
Alignment:
Q  31 ctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaacacc 123  Q
    ||||||||||||| || || || |||||||| |||||||||||||| |||| |||  | |||||||||| |||||| ||  | ||||||||||    
T  41147925 ctctcattgaaaaggttaaattaaattcattcttatggttgaaatctaaacaggtcacatttgcttataattatcacgattggtggaaacacc 41148017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 7704624 - 7704568
Alignment:
Q  63 ttatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaa 119  Q
    |||||||||||||||||||  |   ||||| ||||||||||||||||| ||||||||    
T  7704624 ttatggttgaaatcaaaacatgcatctttttcttatagttatcatgactgatggaaa 7704568  T

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