View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_36 (Length: 221)
Name: NF10982_low_36
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 53494045 - 53494233
Alignment:
| Q |
17 |
agattatacgcgttaataataagatatttatccgaataaacaatgtagtatcgttcaaaggcaaatgaataaacatgagttatgaaattgggaatatttt |
116 |
Q |
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| T |
53494045 |
agattatacgcgttaataataagatatttatccgaataaacaatgtagtatcgttcaaaggcaaatgaataaacatgagttatgaaattgggaatatttt |
53494144 |
T |
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| Q |
117 |
agaaaggtttgaattgaagttggttccacctcagaatacc-atctttgaaattttgatccttccgattgatgagtcttacgccggtctc |
204 |
Q |
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| T |
53494145 |
agaaaggtttgaattgaagttggttccacctcagaataccaatctttgaaattttgatccttccgattgatgagtcttacgccggtctc |
53494233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 16073320 - 16073385
Alignment:
| Q |
66 |
atcgttcaaaggcaaatgaataaacatgagttatgaaattgggaatattttagaaaggtttgaatt |
131 |
Q |
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| T |
16073320 |
atcgttcaaaggaaaatgtataaaaatgagttatgaatttggggatattttagaaaggtttcaatt |
16073385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 16073456 - 16073518
Alignment:
| Q |
144 |
acctcagaatacca-tctttgaaattttgatccttccgattgatgagtcttacgccggtctct |
205 |
Q |
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| T |
16073456 |
acctcggaataccactcttcgaaattttcatccttcctgttgatgagtcttaagccggtctct |
16073518 |
T |
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