View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_37 (Length: 218)
Name: NF10982_low_37
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 39952584 - 39952384
Alignment:
| Q |
1 |
taatgtactgcagcataaatatagatgct-ccaaaaatgaagtgattagcgaaattagagcaccaacaaaaccagagttcaatctactcacaccatatcc |
99 |
Q |
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| T |
39952584 |
taatgtactgcagcataaatatagatgctgccaaaaatgaagtgattagcgaaattaaagcaccaacaaaaccagagttcaatctactcacaccatatcc |
39952485 |
T |
|
| Q |
100 |
attgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952484 |
attgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaat |
39952385 |
T |
|
| Q |
200 |
g |
200 |
Q |
| |
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| |
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| T |
39952384 |
g |
39952384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 37222123 - 37222025
Alignment:
| Q |
102 |
tgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatg |
200 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37222123 |
tgacatctgcgaaaaggatatacaaaaacaattatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatg |
37222025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 34230119 - 34230205
Alignment:
| Q |
114 |
aaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230119 |
aaaggatgtacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatg |
34230205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 30339802 - 30339720
Alignment:
| Q |
118 |
gatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatg |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30339802 |
gatatacaaaaacaataatcagcaagagtttgagatactactgacctgttataacttgtcaaacatctgcttgaagtacaatg |
30339720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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