View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_4 (Length: 579)
Name: NF10982_low_4
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_4 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 47366719 - 47367291
Alignment:
| Q |
1 |
cataagacgtggtcatgagtgcggatcttatagctgcaggactccattcaggatgggctcccttaagaagagcagctaacccacttacatgggggcatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366719 |
cataagacgtggtcatgagtgcggatcttatagctgcaggactccattcaggatgggctcccttaagaagagcagctaacccacttacatgggggcatga |
47366818 |
T |
|
| Q |
101 |
catggatgtgccagagatgatgttgaagctcacatgccttgtgtcaactgacaagccagttggtccaactttcccactccatccagctagaatgttgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366819 |
catggatgtgccagagatgatgttgaagctcacatgccttgtgtcaactgacaagccagttggtccaactttcccactccatccagctagaatgttgact |
47366918 |
T |
|
| Q |
201 |
cctggagctatcaggtctggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatggttgaaccccgaacc |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366919 |
cctggagctatcaggtcgggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatggttgaaccccgaacc |
47367018 |
T |
|
| Q |
301 |
gggtaccgccaaatgcaattttagcagttggattgggagctgaagaagcatacttctttatttcattgcttgctttctctcccaaagctgctgcagggag |
400 |
Q |
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| T |
47367019 |
gggtaccgccaaatgcaattttagcagttggattgggagctgaagaagcatacttctttatttcattgcttgctttctctcccaaagctgctgcagggag |
47367118 |
T |
|
| Q |
401 |
gagaaaggagtcagcaactagctcttcaccataatcttggttgtttgctaaaatcatcccaattcctcctgcgcgtttgaccaccaaactcttttcagct |
500 |
Q |
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| T |
47367119 |
gagaaaggagtcagcaactagctcttcaccataatcttggttgtttgctaaaatcatcccaattcctcctgcgcgtttgaccaccaaactcttttcagct |
47367218 |
T |
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| Q |
501 |
ctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatcaaactatctgtgctgc |
573 |
Q |
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| T |
47367219 |
ctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatcaaactatctgtgctgc |
47367291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 68213 - 68161
Alignment:
| Q |
75 |
gctaacccacttacatgggggcatgacatggatgtgccagagatgatgttgaa |
127 |
Q |
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| T |
68213 |
gctaatccacttacatgagggcatgacatggatgtgcctgagataatgttgaa |
68161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 5725682 - 5725734
Alignment:
| Q |
75 |
gctaacccacttacatgggggcatgacatggatgtgccagagatgatgttgaa |
127 |
Q |
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| T |
5725682 |
gctaatccacttgcatgagggcatgacatggatgtgcctgagataatgttgaa |
5725734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 5375670 - 5375564
Alignment:
| Q |
186 |
gctagaatgttgactcctggagctatcaggtctggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatg |
285 |
Q |
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|||| |||||| || ||||||||||| | || |||||||| || |||||||| | ||||||||||||| || ||||| ||||| |||||||| || | |
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| T |
5375670 |
gctaaaatgtttacacctggagctattaaatccggtttgagaatctttggtgttaaactatttggtcctcttgaactgaatgctgctaccactggtgaag |
5375571 |
T |
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| Q |
286 |
gttgaac |
292 |
Q |
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| T |
5375570 |
gttgaac |
5375564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 39738456 - 39738509
Alignment:
| Q |
71 |
agcagctaacccacttacatgggggcatgacatggatgtgccagagatgatgtt |
124 |
Q |
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| T |
39738456 |
agcagctaaaccactcacatgagggcaggacatggatgttccagagataatgtt |
39738509 |
T |
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