View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_6 (Length: 535)
Name: NF10982_low_6
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 40583805 - 40584335
Alignment:
| Q |
1 |
ctttaaattgcaaccagtactattatttgattttgatgtttacatt--------------tggacgattttgagttttcttactttgataactttgtgtc |
86 |
Q |
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| T |
40583805 |
ctttaaattgcaaccagtactattatttgattttgatgtttgcatttcatattttgcatttggacgattttgaattttcttactttgataactttgtgtc |
40583904 |
T |
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| Q |
87 |
tatctctctttgaatcaattgtttttctcatttaaaaaatctattttaataattaattcatctcctaaatacatcaaaatcagactcatctacgatgaga |
186 |
Q |
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| T |
40583905 |
tatctctatttgaatcaattgtctttctcatttaaataatttattttaataattggttcatctcctaaatacatcaaaatcggcctcatctactatgaga |
40584004 |
T |
|
| Q |
187 |
gaccttggtaggtctaggtctcttgccatatgtgagtcaaataaaaaataataatttttggataatggaagtcctatggatcttaacatagattgtcagt |
286 |
Q |
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| T |
40584005 |
gaccttggtaggtctaggtctcctaccatatgtgagtcaaataaaaaataataatttttggataatggaagtcctatggatcttatcatatattgtcagt |
40584104 |
T |
|
| Q |
287 |
acccaattcttttttaatccattttcacttttcaagacatcgaagatgatactctaggatgtggcggagaggggctacaaccgtagcaaaaatatgcacc |
386 |
Q |
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| T |
40584105 |
acctaattcttttttaatccattttcacttttcaagacatcgaagatgatactctaggatgtggcggagaggggctacaaccgtagcaaaaatatacacc |
40584204 |
T |
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| Q |
387 |
aaatgagtgtgatcgagaagaagagtagttttgaattagaaggatccactcttttctacgtttatgtaaaaatcggagaattaacttttttcaaatacac |
486 |
Q |
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| T |
40584205 |
aaatgagtgtgattgagaagaagagtagttttgaattagaaggatccactcttttctacgtttatgt-aaaatcggagaattaacttttttcaaatacac |
40584303 |
T |
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| Q |
487 |
atgaacaattagttgagagttggggttagatt |
518 |
Q |
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| T |
40584304 |
atgaacaattagttgagagttggggttagatt |
40584335 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 36490512 - 36490560
Alignment:
| Q |
109 |
ttttctcatttaaaaaatctattttaataattaattcatctcctaaata |
157 |
Q |
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| T |
36490512 |
ttttctcatttaaataatttattttactaattcattcatctcctaaata |
36490560 |
T |
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