View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10982_low_8 (Length: 508)
Name: NF10982_low_8
Description: NF10982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10982_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Original strand, 34300730 - 34301202
Alignment:
| Q |
14 |
cagagacatgctatcttttggaaggaaaagtgaaggtcactcctagtggggctaatgaggcagttgaaatttctgctggtgatttggttgttttcccaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34300730 |
cagagacatgctatcttttggaaggaaaagtgaaggtcactcctagtggggctaatgaggcagttgaaatttctgctggtgatttggttgttttcccaaa |
34300829 |
T |
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| Q |
114 |
aggaatgagttgtacttgggatgtttctgttggtgtggataagcactataaatttgaataaaatctcatatgcctactaatgtatgaagatggaggactt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34300830 |
aggaatgagttgtacttgggatgtttctgttggtgtggataagcactataaatttgaataaaatctcatatgc---ctaatgtatgaagatggaggactt |
34300926 |
T |
|
| Q |
214 |
tgattaattgaataaataggtctgattttatttgtaatagtgta-gtatgtatgttaatcaaataaaatttattgcacaaggttcatgttaattatataa |
312 |
Q |
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| T |
34300927 |
tgattaattgaataaataggtctcattttatttgtaatagtgtatgtatgtatgttaatcaaataaaatttattgcacaaggttcatgttaattatataa |
34301026 |
T |
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| Q |
313 |
ttcctttnnnnnnnnnnctgtaagttatattcttgtacttattttactattttaagaccataaaaataggtttcctaaataagtgggaccagtgtgaacc |
412 |
Q |
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| T |
34301027 |
ttccttt--aaaaaaaactgtaagttatattcttgtacttattttactattttaagaccataaaaataggtttcctaaataagtgggaccagtgtgaacc |
34301124 |
T |
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| Q |
413 |
caaatttaaggtatcactggataagtttttgtggtgtttttactgttccctttcaaaagcattcattctcggatcaag |
490 |
Q |
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| T |
34301125 |
caaatttaaggtatcactggataagtttttgtggtgtttttactgttccctttcaaaagcattcattctcggatcaag |
34301202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 29986176 - 29986114
Alignment:
| Q |
109 |
ccaaaaggaatgagttgtacttgggatgtttctgttggtgtggataagcactataaatttgaa |
171 |
Q |
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||||||||| | ||||||||||||||||||||| ||| ||| |||||| |||| ||||||||| |
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| T |
29986176 |
ccaaaaggactaagttgtacttgggatgtttctattgctgttgataagtactacaaatttgaa |
29986114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 20658461 - 20658314
Alignment:
| Q |
15 |
agagacatgctatcttttggaaggaaaagtgaaggtcactcctagtggggctaatgaggcagttgaaatttctgctggtgatttggttgttttcccaaaa |
114 |
Q |
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| T |
20658461 |
agagacatgttatcttctagaaggagaagttaaggtaacaccaaatggagcaaatgagtcagttgaatttggtgctggtgacttggttgtgtttcctaaa |
20658362 |
T |
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| Q |
115 |
ggaatgagttgtacttgggatgtttctgttggtgtggataagcactat |
162 |
Q |
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| T |
20658361 |
gggatgagttgtacttgggatgtgtctgttgctgtgaacaagcactat |
20658314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 12027496 - 12027643
Alignment:
| Q |
15 |
agagacatgctatcttttggaaggaaaagtgaaggtcactcctagtggggctaatgaggcagttgaaatttctgctggtgatttggttgttttcccaaaa |
114 |
Q |
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| T |
12027496 |
agagacatgttatcttctagaaggagaagttaaggtaacaccaaatggagcaaatgagtcagttgaatttggtgctggtgacttggttgtgtttcctaaa |
12027595 |
T |
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| Q |
115 |
ggaatgagttgtacttgggatgtttctgttggtgtggataagcactat |
162 |
Q |
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|| |||| ||||||||||||||| ||||||| |||| | ||||||||| |
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| T |
12027596 |
gggatgacttgtacttgggatgtgtctgttgctgtgaacaagcactat |
12027643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 12034416 - 12034563
Alignment:
| Q |
15 |
agagacatgctatcttttggaaggaaaagtgaaggtcactcctagtggggctaatgaggcagttgaaatttctgctggtgatttggttgttttcccaaaa |
114 |
Q |
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||||||||| |||||| | |||||| |||| ||||| || || | ||| || |||||| |||||||| || ||||||||| |||||||| || || ||| |
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| T |
12034416 |
agagacatgttatcttctagaaggagaagttaaggtaacaccaaatggagcaaatgagtcagttgaatttggtgctggtgacttggttgtgtttcctaaa |
12034515 |
T |
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| Q |
115 |
ggaatgagttgtacttgggatgtttctgttggtgtggataagcactat |
162 |
Q |
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| T |
12034516 |
gggatgacttgtacttgggatgtgtctgttgctgtgaacaagcactat |
12034563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 35114286 - 35114371
Alignment:
| Q |
90 |
tggtgatttggttgttttcccaaaaggaatgagttgtacttgggatgtttctgttggtgtggataagcactataaatttgaataaa |
175 |
Q |
| |
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|||||| |||||||| || || ||||| |||||||||||||||||||| ||||||| |||| | || |||||| | |||||||||| |
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| T |
35114286 |
tggtgacttggttgtgtttcctaaaggcatgagttgtacttgggatgtgtctgttgctgtgaacaaacactatcactttgaataaa |
35114371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 39756242 - 39756305
Alignment:
| Q |
109 |
ccaaaaggaatgagttgtacttgggatgtttctgttggtgtggataagcactataaatttgaat |
172 |
Q |
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||||||||| | ||||||||||||||||||||||| | ||| || ||| |||| |||||||||| |
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| T |
39756242 |
ccaaaaggactcagttgtacttgggatgtttctgtagctgttgacaagtactacaaatttgaat |
39756305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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