View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10983_high_13 (Length: 300)
Name: NF10983_high_13
Description: NF10983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10983_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 19144645 - 19144938
Alignment:
| Q |
1 |
gtccattcaatgatggaaattctgccatgcttgcttttattgctttgaaaggtggtggatttgggcttggtggttgaacaaggactcgaaagcccgagaa |
100 |
Q |
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| T |
19144645 |
gtccattcaatgatggaaattctgccatgcttgcttttattgctttgaaaggtggtgggtttgggcttgggggttgaacaaggacgcgaaagcccgagaa |
19144744 |
T |
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| Q |
101 |
ggtgaagtagtttgcatcgactgggccggttatcgggcttatgaagtcggttagtatgtcggggtcaccagccctagtgactgtcacaagggtaaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |
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| T |
19144745 |
ggtgaagtagtttgcatcgactgggccggttatcgggcttatgaagtcggttagtatgtcagggtcaccagccctagtgattgtcacaagggtaaaagtg |
19144844 |
T |
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| Q |
201 |
gaaataatgagtgagacaacaactttcaaggtagaggaagacatgnnnnnnnagtatgattataatgttgaagaactttgaagatattcttgga |
294 |
Q |
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| T |
19144845 |
gaaatgatgagtgagagaacaactttcaaggtagaggaagacatgtttttttagtatgattataatgttgaagaactttgaagatgttgttgga |
19144938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 19148348 - 19148104
Alignment:
| Q |
1 |
gtccattcaatgatggaaattctgccatgcttgcttttattgctttgaaaggtggtggatttgggcttggtggttgaacaaggactcgaaagcccgagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19148348 |
gtccattcaatgatggaaattctgccatgcttgcttttattgctttgaaaggtggtgggtttgggcttgggggttgaacaaggactcgaaagcccgagaa |
19148249 |
T |
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| Q |
101 |
ggtgaagtagtttgcatcgactgggccggttatcgggcttatgaagtcggttagtatgtcggggtcaccagccctagtgactgtcacaagggtaaacatg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19148248 |
ggtgaagtagtttgcatcgactgggccagttatcgggcttatgaagtcggttagtatgtcggggtcaccagccctagtgactgtcacaagggtaaacgtg |
19148149 |
T |
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| Q |
201 |
gaaataatgagtgagacaacaactttcaaggtagaggaagacatg |
245 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
19148148 |
gaaataatgagtgagagaacaactttcaagctagaggaagacatg |
19148104 |
T |
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