View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10983_high_2 (Length: 648)
Name: NF10983_high_2
Description: NF10983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10983_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 85 - 598
Target Start/End: Original strand, 26946248 - 26946753
Alignment:
| Q |
85 |
cctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacctaa |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946248 |
cctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacctgc |
26946347 |
T |
|
| Q |
185 |
acaagcgaaattaaaaacacaataactcaataatttctcattatgaaatcaaatcctaatataaacaatgcaaaatctcataatctcatagattcaaagc |
284 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26946348 |
acaagcgaaattaaaaaaacaataactcaataatttctcattatgaaatcaaatcctaatataaacaatgcaaaatc--------tcatagattcaaagc |
26946439 |
T |
|
| Q |
285 |
aacaaattatttaattatagtaactaaactatcaatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946440 |
aacaaattatttaattatagtaactaaactatcaatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatc |
26946539 |
T |
|
| Q |
385 |
aacggtccacatatccaaagtccagttgcaggtgctgtaaatttaacaatttccttcaattgaatccatataccttgattcgctagttccttttcaacac |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26946540 |
aacggtccacatatccaaagtccagttgcaggtgctgtaaatttaacaatttccttcaattgaatccatataccttgattcgctagttccttttcaacac |
26946639 |
T |
|
| Q |
485 |
cctgtgtcgccgcttcattttcaattttagcttcttcagaaggttcgctgattcggccttcaacgccggtgagttctcgaggttgaatcgcgcgggcggt |
584 |
Q |
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| T |
26946640 |
cctgtgtcgccgcttcattttcaattttagcttcttcagaaggttcgctgattcggccttcatcgccggtgagttctcgaggttgaatcgcgcgggcggt |
26946739 |
T |
|
| Q |
585 |
tacgaaccgagttg |
598 |
Q |
| |
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|||||||||||||| |
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| T |
26946740 |
tacgaaccgagttg |
26946753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 26991350 - 26991489
Alignment:
| Q |
318 |
aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaagtccagttgcaggt |
417 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| || | ||||||||||||||| |||| |||||| ||| |||||||| |
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| T |
26991350 |
aatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaatgagactcatcaacggtccgcataaccaaagaccaattgcaggt |
26991449 |
T |
|
| Q |
418 |
gctgtaaatttaacaatttccttcaattgaatccatatac |
457 |
Q |
| |
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| T |
26991450 |
ccagtaaataaaacaatttccttcatctgaatccatatac |
26991489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 26976110 - 26975971
Alignment:
| Q |
318 |
aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaagtccagttgcaggt |
417 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || | |||||||||||||||||||| |||||| ||| | |||||| |
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| T |
26976110 |
aatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaatgagactcatcaacggtccacataaccaaagaccaatagcaggt |
26976011 |
T |
|
| Q |
418 |
gctgtaaatttaacaatttccttcaattgaatccatatac |
457 |
Q |
| |
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| ||||| ||||||||||||| ||||||||||||| |
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| T |
26976010 |
ccagtaaacaatacaatttccttcatctgaatccatatac |
26975971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 27005796 - 27005935
Alignment:
| Q |
318 |
aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaagtccagttgcaggt |
417 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || | |||||||||||||||||||| |||||| ||| | |||||| |
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| T |
27005796 |
aatacctaaagcagcaagttcaattgaacttccttgaccaacaacagctgtatcaatgagactcatcaacggtccacataaccaaagaccaatagcaggt |
27005895 |
T |
|
| Q |
418 |
gctgtaaatttaacaatttccttcaattgaatccatatac |
457 |
Q |
| |
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| ||||| ||||||||||||| ||||||||||||| |
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| T |
27005896 |
ccagtaaacaatacaatttccttcatctgaatccatatac |
27005935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 26953848 - 26953945
Alignment:
| Q |
85 |
cctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacct |
182 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| ||| ||||||| ||||||||||| || ||||||||||||||||||| || ||||||||| |
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| T |
26953848 |
cctgtttagcaagggcagtagcaattatattggatgtaacaactgacagaaacatgaacgttaaggtcatgtaatcacaaacaaccgtggcaggacct |
26953945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 26991178 - 26991275
Alignment:
| Q |
85 |
cctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacct |
182 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| || |||||||| || |||| || |||||||||| |||||||||||||||| |
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| T |
26991178 |
cctgtttagcaagggcagtagcaaccatattcgaagtagcaatcgacagaaacataaaagagtagcccaaataatcacaaaaaacagtagcaggacct |
26991275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 26954273 - 26954325
Alignment:
| Q |
319 |
atacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatc |
371 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
26954273 |
atacctaaagcagcaagctcggttgaacttccctgaccaacaacagcagtatc |
26954325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 26976281 - 26976184
Alignment:
| Q |
85 |
cctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacatgaagacatagctcatgtaatcacaaacaacagtagcaggacct |
182 |
Q |
| |
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|||||||||| || ||||||||||||||||| |||||||||| || | |||||| || | |||| || ||||| |||| |||||||||||||||| |
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| T |
26976281 |
cctgtttagcaagtgcagtagcaaccatattcgaagtagcaatcgacaaaaacataaacaagtagcccaaataatcgcaaaaaacagtagcaggacct |
26976184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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