View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10983_high_6 (Length: 359)
Name: NF10983_high_6
Description: NF10983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10983_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 31779070 - 31779407
Alignment:
| Q |
1 |
aataatttatccaacgattcacataacaatattgaatgaatgaatgcatatgatatgaaacggtgagatggaaccaatggccatatgaatatgatatgta |
100 |
Q |
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| T |
31779070 |
aataatttatccaacgattcacataacaatattgaatgaatgaatgcatatgatatgaaacggtgagatggaaccaatgggcatat------gatatgta |
31779163 |
T |
|
| Q |
101 |
ttaggtatgttagattcctcccatcctcattctcgtgggaaaatgaggacacgactagctatcccacttggatccgttttgccaaattcccatcaacatc |
200 |
Q |
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| T |
31779164 |
ttaggtatgttagattcctcccatcctcattctcgtgggaaaataaggacacgactagctatcccacttggatccgttttggcaaattcccatcaacatc |
31779263 |
T |
|
| Q |
201 |
tcaatatgagatctctttgacttgcaacgcttcaacatttgatacattaagagactattttaaaatttgatacattaataaattattataactactcact |
300 |
Q |
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| T |
31779264 |
tcaatatgggatctctttgacttgcaacgcttcaacatttgatacattaagagactattttaaaatttgatacattaataaattattataactactcact |
31779363 |
T |
|
| Q |
301 |
aaaataaccattatccttttctttaattataccatgactttcat |
344 |
Q |
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| T |
31779364 |
aaaataaccattatccttttctttaattataccatgactttcat |
31779407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 29116179 - 29116149
Alignment:
| Q |
266 |
tttgatacattaataaattattataactact |
296 |
Q |
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| T |
29116179 |
tttgatacattaataaattattataactact |
29116149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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