View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10983_low_1 (Length: 342)
Name: NF10983_low_1
Description: NF10983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10983_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 131 - 305
Target Start/End: Complemental strand, 4176133 - 4175959
Alignment:
| Q |
131 |
cagaaaatatcaagaacttctaaaataaaatgattgcaaagaggacaattccctctactaacccaaagctctcttgaacacatcctgcaaaacgtgtgtc |
230 |
Q |
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| T |
4176133 |
cagaaaatatcaagaacttctaaaataaaatgattgcaaagaggacaattccctctactaacccaaagctctcttgaacacatcctgcaaaacgtgtgtc |
4176034 |
T |
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| Q |
231 |
cacatggtataaacgctgcacctttatccctcaccatacacacgcaacaattgtgttccaccttaacattactcc |
305 |
Q |
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| T |
4176033 |
cacatggtataaacgctgcacctttatccctcaccatacacacgcaacaattgtgttccaccttaacattactcc |
4175959 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 55518691 - 55518567
Alignment:
| Q |
131 |
cagaaaatatcaagaacttctaaaataaaatgattgcaaagaggacaattccctctactaacccaaagctctcttgaacacatcctgcaaaacgtgtgtc |
230 |
Q |
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| T |
55518691 |
cagaaaatatcgagaatctcgagaatagaacgattacaaaggggacaatttcctcgattcaaccacagttcccttgaacacactctgcaaaaagtgtgtc |
55518592 |
T |
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| Q |
231 |
cacatggtataaacgctgcaccttt |
255 |
Q |
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| T |
55518591 |
cacacggtatgaacgctgcaccttt |
55518567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 8902983 - 8902901
Alignment:
| Q |
197 |
agctctcttgaacacatcctgcaaaacgtgtgtccacatggtataaacgctgcacctttatccctcaccatacacacgcaaca |
279 |
Q |
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| T |
8902983 |
agctccctagaacaaaccctgcaaaaagtatgtccacatggaataaacgccgcacctttattcctccccatgcacacacaaca |
8902901 |
T |
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