View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10984_low_1 (Length: 450)
Name: NF10984_low_1
Description: NF10984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10984_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 34699245 - 34698839
Alignment:
| Q |
18 |
cataaccaaaaccgctacacccatagatgtaataggcctcgtcgatataactaacccacccttatccatcaccttaaacgactcatgttttcttgcaaat |
117 |
Q |
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| T |
34699245 |
cataaccaaaacagctacacccatagatgtaataggcctcgtcgaaataactaacccacccttatccatcaccttaaatgactcatgttttcttgcaaat |
34699146 |
T |
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| Q |
118 |
ggtcacccttttctcactcaagtcccacccaacataacaaccaccaccccttccccttttctccataattccaaatccaacaaaaacaccaactacaata |
217 |
Q |
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| T |
34699145 |
ggccacccttttctcactcaagtcccacccaacataacaaccaccaccccttccccttttctccataattccaaatccaac------------tacaata |
34699058 |
T |
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| Q |
218 |
ccacgttgcaacatggttgcttcgttggtttcaacaccaccgaacccaaaagccaccacgtggttccacttggcaaactcaaaggaatccggttcatgag |
317 |
Q |
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| T |
34699057 |
ccacgttgcaacatggttgcttcgttggtttcaacaccaccgaacccaaaagccaccacgtggttccacttggcaaactcaaaggaatccggttcatgag |
34698958 |
T |
|
| Q |
318 |
tatattccggtttaaggtttggtggacaactcattggaccggaaccaacggacatgagttagaacatgagacacaaatgttaatccttgaccaaaacaaa |
417 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698957 |
tatattccgttttaaggtttggtggacaactcattggaccggaaccaacggacatgagttagaacatgagacacaaatgttaatccttgaccaaaacaaa |
34698858 |
T |
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| Q |
418 |
tcactcggacgcccctatg |
436 |
Q |
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| T |
34698857 |
tcactcggacgcccctatg |
34698839 |
T |
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