View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10984_low_3 (Length: 319)
Name: NF10984_low_3
Description: NF10984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10984_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 40958182 - 40957887
Alignment:
| Q |
18 |
agttcacccaaacgttgaatggttttctgaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattg |
117 |
Q |
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| T |
40958182 |
agttcacccaaacgttgaatggttttcagaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattg |
40958083 |
T |
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| Q |
118 |
tttctatgtcataaaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgctt |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958082 |
tttctatgtcatacaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgctt |
40957983 |
T |
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| Q |
218 |
aacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctccttttttctctgcttc |
313 |
Q |
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| T |
40957982 |
aacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctccttttttctctgcttc |
40957887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 40945189 - 40944894
Alignment:
| Q |
18 |
agttcacccaaacgttgaatggttttctgaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattg |
117 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||| ||| | |||||||||||||||| ||||||| ||||| | |
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| T |
40945189 |
agttcacccaaccgttgacgagttttctgaacaagctcatcaatttcttgttgattattgtcttgatagtccttatcagttaatttccacagtttcaatt |
40945090 |
T |
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| Q |
118 |
tttctatgtcataaaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgctt |
217 |
Q |
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| T |
40945089 |
catctgtgtcatacaccttctgcactatgaacccgggatgtaccttacgatttggaagctgtttgtgtatggggacaaaatgcaccacacacttatgcat |
40944990 |
T |
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| Q |
218 |
aacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctccttttttctctgcttc |
313 |
Q |
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| T |
40944989 |
aacagattctgcaggaacctcatctcggtggaaactataaaacagctctctggtgtcaacggattgccagctaccacctccctttttttctgcttc |
40944894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 22508020 - 22508269
Alignment:
| Q |
20 |
ttcacccaaacgttgaatggttttctgaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattgtt |
119 |
Q |
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|||||||||||||||||| |||||||||||||| | ||| ||||||| ||| | || ||| | |||| |||||||||||| ||||| |||||| || | |
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| T |
22508020 |
ttcacccaaacgttgaatagttttctgaacaaggttatccatttcttgttgctgattgtcgtcgtagaccttatcagttaaattccttaatttcttttct |
22508119 |
T |
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| Q |
120 |
tctatgtcataaaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgcttaa |
219 |
Q |
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| | ||| ||| ||||| ||||| | ||||| ||| || ||||| ||||||||| |||||||| |||| ||||| ||| |||| |||||| ||| |
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| T |
22508120 |
tttgtgttatacaccttttgcacaatgaacccaggaacctccttacttgttggaagttttttgtgtaccggaatgaaatgaaccgcacatgtatgcataa |
22508219 |
T |
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| Q |
220 |
cagattctgcaggaacagcgtcttggtggaaactataatataactctctc |
269 |
Q |
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|| |||||| |||||| | | |||||||||||||||| ||||||||||| |
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| T |
22508220 |
cattttctgccggaacaacatattggtggaaactataaaataactctctc |
22508269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 2665327 - 2665409
Alignment:
| Q |
153 |
ggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgcttaacagattctgcaggaac |
235 |
Q |
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||||| |||||||| || |||| ||||||| | ||| |||||||||||||| ||| ||||| ||||||| ||||||||||| |
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| T |
2665327 |
ggatgttgcttacgtttcggaaactgtttgttcaagggcacaaaatgcaccacgcacttatgcataacagactctgcaggaac |
2665409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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