View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10984_low_5 (Length: 312)
Name: NF10984_low_5
Description: NF10984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10984_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 14993855 - 14994015
Alignment:
| Q |
1 |
acgaaacccgcaactgctactatccatatttttccattaacggattattattttgaatgacaagaaaagtttaacataaatacacatgtaaggagtnnnn |
100 |
Q |
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| T |
14993855 |
acgaaacccgcaactgctactacccatatttttccattaaca---tattattttgaatgacaagaaaagtttaacataaatacacatgtaaggagtaaaa |
14993951 |
T |
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| Q |
101 |
nnncaaactgtaagtcaaattaaatttaaggaatctcccaaaactaaaatcaaatctttcttta |
164 |
Q |
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| T |
14993952 |
aaataaattgaaagtcaaattgaatttaaggaatctcccaaaactaaaatcaaatcttttttta |
14994015 |
T |
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Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 17802950 - 17803095
Alignment:
| Q |
147 |
aaatcaaatctttctttaatttgacagccaacagatattagcataaaattacaaaacgcatattaaaggttacaacagaaatctgattgcctccatagca |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||| |||||||||||| || |||||| |||||| |
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| T |
17802950 |
aaatcaaatctttctttaatttggcagccaacagatattaacataaaattacaaaatgcata---aaggcgacaacagaaatccgactgcctctatagca |
17803046 |
T |
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| Q |
247 |
gacaatttatttgattatgttaaaattagttaatttggtgtttgcatct |
295 |
Q |
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| T |
17803047 |
gacattttatttgattttgttaaaattagttaatttggtgtttgcatct |
17803095 |
T |
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