View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10985_high_2 (Length: 653)

Name: NF10985_high_2
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10985_high_2
NF10985_high_2
[»] chr8 (1 HSPs)
chr8 (18-635)||(9545240-9545857)
[»] chr7 (1 HSPs)
chr7 (302-441)||(40393678-40393817)


Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Complemental strand, 9545857 - 9545240
Alignment:
Q  18 caatgaacaccgaaatcggaaagatacagaagcaaatacacgaggcttcgttggaggaaagcgatactcccttgaagaagaagttagacgaatttggtgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545857 caatgaacaccgaaatcggaaagatacagaagcaaatacacgaggcttcgttggaggaaagcgatactcccttgaagaagaagttagacgaatttggtgg 9545758  T
Q  118 caggcttacaacttctattggaatagtttgtcttgttgtttggattataaactacaaaaatttcatatcttgggatgttgttgatggatggcctacaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545757 caggcttacaacttctattggaatagtttgtcttgttgtttggattataaactacaaaaatttcatatcttgggatgttgttgatggatggcctacaaac 9545658  T
Q  218 attcaattttcttttcagaaatgcacttactatttcaaaattgctgttgctcttgctgtggctgcaattccagaaggtcttccggcggttattacaactt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545657 attcaattttcttttcagaaatgcacttactatttcaaaattgctgttgctcttgctgtggctgcaattccagaaggtcttccggcggttattacaactt 9545558  T
Q  318 gtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtaccactgtgatttgttcaga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545557 gtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtaccactgtgatttgttcaga 9545458  T
Q  418 taaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgtagagtcattagtgttgaagggaca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545457 taaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgtagagtcattagtgttgaagggaca 9545358  T
Q  518 acatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcggaaatttgtgctgtttgtaatgatg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545357 acatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcggaaatttgtgctgtttgtaatgatg 9545258  T
Q  618 ccggtgtttattttgatg 635  Q
    ||||||||||||||||||    
T  9545257 ccggtgtttattttgatg 9545240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 441
Target Start/End: Complemental strand, 40393817 - 40393678
Alignment:
Q  302 gcggttattacaacttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtacca 401  Q
    ||||| ||||| |||||| | |||||||||||  | |||||||| || ||||||||  | || || ||||| ||||||||||||||  |||| || || |    
T  40393817 gcggtcattacgacttgtctcgcacttggtactcgcaaaatggcccagaagaatgccctggttaggaagctaccaagtgttgaaaccctgggttgcacaa 40393718  T
Q  402 ctgtgatttgttcagataaaaccggtacactgactacaaa 441  Q
    ||||||| ||||| |||||||| |||||||||||||||||    
T  40393717 ctgtgatatgttctgataaaactggtacactgactacaaa 40393678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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