View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10985_high_3 (Length: 644)

Name: NF10985_high_3
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10985_high_3
NF10985_high_3
[»] chr1 (2 HSPs)
chr1 (12-627)||(41329819-41330434)
chr1 (12-627)||(41338409-41339024)
[»] chr6 (3 HSPs)
chr6 (125-369)||(20927899-20928143)
chr6 (354-533)||(20927709-20927888)
chr6 (12-87)||(20928162-20928237)
[»] chr2 (3 HSPs)
chr2 (164-572)||(45011500-45011908)
chr2 (222-522)||(44883955-44884255)
chr2 (246-361)||(25102458-25102573)
[»] chr7 (4 HSPs)
chr7 (221-567)||(8864397-8864743)
chr7 (186-522)||(17244605-17244941)
chr7 (308-456)||(30172397-30172545)
chr7 (308-456)||(3207261-3207409)
[»] chr8 (2 HSPs)
chr8 (186-491)||(29338020-29338325)
chr8 (179-237)||(14503684-14503742)
[»] scaffold0252 (1 HSPs)
scaffold0252 (222-344)||(5758-5880)
[»] chr5 (2 HSPs)
chr5 (179-267)||(22290309-22290397)
chr5 (221-263)||(10727306-10727348)
[»] chr3 (10 HSPs)
chr3 (179-237)||(17784777-17784835)
chr3 (179-237)||(19086296-19086354)
chr3 (530-627)||(16747076-16747173)
chr3 (222-343)||(16746767-16746889)
chr3 (222-361)||(31663102-31663241)
chr3 (222-361)||(31933155-31933294)
chr3 (250-361)||(31952488-31952599)
chr3 (179-237)||(6008154-6008212)
chr3 (374-567)||(49640234-49640427)
chr3 (401-465)||(36788387-36788451)
[»] scaffold0011 (1 HSPs)
scaffold0011 (225-448)||(188646-188869)
[»] chr4 (3 HSPs)
chr4 (179-237)||(30857325-30857383)
chr4 (401-454)||(27012069-27012122)
chr4 (179-236)||(55225576-55225633)
[»] scaffold0381 (1 HSPs)
scaffold0381 (401-454)||(7663-7716)


Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 12 - 627
Target Start/End: Complemental strand, 41330434 - 41329819
Alignment:
Q  12 taggacaactgatggcttaactaaaggctgattcatataaggagagaatatttttcatgacattttcttgtcactcattagctttgaagagaagaaaaca 111  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41330434 taggacaactgatggcttaaccagaggctgattcatataaggagagaatatttttcatgacattttcttgtcactcattagctttgaagagaagaaaaca 41330335  T
Q  112 attattcgcgaacaaaagatgagagacggggggcgccctgtgacaaattttggtacctgtaataactcctctcgtctcggcatctctaataagcaaagat 211  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41330334 attattcgcgaacaaaagatgagagacggggggcgccgtgtgacaaattttggtacctgtaataactcctctcgtctcggcatctctaataaccaaagat 41330235  T
Q  212 agacctttgacacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaa 311  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41330234 agacctttgacacaaataataaacaaataaacgaaaaaaggatccccttgtcgaaggccacacctcgagatgatagggccaaccttttcactatggacaa 41330135  T
Q  312 gaacataataatccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatcccaatc 411  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41330134 gaacataataatccactgactctacacatatactcatctagtgaatccaatgagcattgaaccccattttaaccataacgactcgcaagtaatcccaatc 41330035  T
Q  412 catacaatcataagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcgtcttagttttcattaaattaatgacctcgattgcaacc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41330034 catacaatcataagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcgtcttagttttcattaaattaatgacctcgattgcaacc 41329935  T
Q  512 ataacattatccataatggacctacccggaatgaaagcagattgattttcagaaatacactaagacaagactcctttcagcctattcgctaacaccttag 611  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41329934 ataacattatccataatggacctacccgaaacgaaagaagattgattctcagaaatacactaagacaagactcctttcagcctattcgctaacaccttag 41329835  T
Q  612 agataagcttataaag 627  Q
    ||||||||||||||||    
T  41329834 agataagcttataaag 41329819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 627
Target Start/End: Complemental strand, 41339024 - 41338409
Alignment:
Q  12 taggacaactgatggcttaactaaaggctgattcatataaggagagaatatttttcatgacattttcttgtcactcattagctttgaagagaagaaaaca 111  Q
    ||||| |||||||||||| || | | ||||||||||||||| |||| ||||| || ||||||||| |||||| |||   | ||||||||| |||||||||    
T  41339024 taggaaaactgatggcttgaccagacgctgattcatataagaagaggatattcttaatgacatttgcttgtccctcgccatctttgaagaaaagaaaaca 41338925  T
Q  112 attattcgcgaacaaaagatgagagacggggggcgccctgtgacaaattttggtacctgtaataactcctctcgtctcggcatctctaataagcaaagat 211  Q
    || || |||||||||||||||||||||||||||||||||  ||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||||    
T  41338924 atcatccgcgaacaaaagatgagagacggggggcgccctacgacaaattttgttaccggtaataacacctctcgtctcggcatctctaataagcgaagat 41338825  T
Q  212 agacctttgacacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaa 311  Q
    ||||||| | |||||||||||||||||||   | ||||||||||||||||||||| ||| ||||  ||||||||| |||||||||||||||||| |||||    
T  41338824 agaccttcggcacaaataataaacaaatatggggaaagaggatccccttgtcgaatgccgcaccccgagatgatatggccaaccttttcactattgacaa 41338725  T
Q  312 gaacataataatccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatcccaatc 411  Q
    ||||  |||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||  || |||||||||||||||    
T  41338724 gaactgaataatccactgactctacacacatactcatccaatgaatccaaagagcattgaaccccattttaaccataacggatcacaagtaatcccaatc 41338625  T
Q  412 catacaatcataagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcgtcttagttttcattaaattaatgacctcgattgcaacc 511  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||  |||||||||||||||| |||||||| | |||||||  ||||    
T  41338624 catacaatcataagccttaataatatatagtttcagagcaacatatatgtcctcgcccctcgtcttagttttcatgaaattaataagctcgattttaacc 41338525  T
Q  512 ataacattatccataatggacctacccggaatgaaagcagattgattttcagaaatacactaagacaagactcctttcagcctattcgctaacaccttag 611  Q
    ||| ||||||||||||| |||||| ||| || ||||||||||||||| ||||||||   |  ||||||||||||||||||||||||||||||| ||||||    
T  41338524 atagcattatccataattgacctagccgaaacgaaagcagattgattgtcagaaattacccgagacaagactcctttcagcctattcgctaaccccttag 41338425  T
Q  612 agataagcttataaag 627  Q
    | ||||| ||||||||    
T  41338424 aaataagattataaag 41338409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 125 - 369
Target Start/End: Complemental strand, 20928143 - 20927899
Alignment:
Q  125 aaaagatgagagacggggggcgccctgtgacaaattttggtacctgtaataactcctctcgtctcggcatctctaataagcaaagatagacctttgacac 224  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||| |||||||| |||||||||||||||||| |||||||||||| | |||    
T  20928143 aaaagatgagatacggggggcgccctgcgacaaattttgttacctttaataacacctctcgtttcggcatctctaataagcgaagatagaccttcggcac 20928044  T
Q  225 aaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataataatc 324  Q
    ||||||||||||||||   | ||||||||||||||||||||| ||| ||||  ||||||||| |||||||||||||||||| |||||||||  |||||||    
T  20928043 aaataataaacaaatatggggaaagaggatccccttgtcgaatgccgcaccccgagatgatatggccaaccttttcactattgacaagaactgaataatc 20927944  T
Q  325 cactgactctacacacatacttatctagtgaatccaatgagcatt 369  Q
    ||||||||||||||||||||| ||| | ||||||||| |||||||    
T  20927943 cactgactctacacacatactcatccaatgaatccaaagagcatt 20927899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 354 - 533
Target Start/End: Complemental strand, 20927888 - 20927709
Alignment:
Q  354 gaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatcccaatccatacaatcataagccttaataatatcaagtttcagaacaac 453  Q
    |||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  20927888 gaatccaaagaacattgaaccccattttaaccataacggctcacaagtaatcccaatccatacaatcataagccttaataatatatagtttcagagcaac 20927789  T
Q  454 atatatgtcctcgcctatcgtcttagttttcattaaattaatgacctcgattgcaaccataacattatccataatggacc 533  Q
    |||||||||||||||  |||||||||||||||| |||||||| |||||||||  ||||||| ||||||||||||| ||||    
T  20927788 atatatgtcctcgcccctcgtcttagttttcatgaaattaataacctcgattttaaccatagcattatccataattgacc 20927709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 20928237 - 20928162
Alignment:
Q  12 taggacaactgatggcttaactaaaggctgattcatataaggagagaatatttttcatgacattttcttgtcactc 87  Q
    ||||| |||||||||||| || ||| |||||||||||||||||||||||||| |||||| ||||| |||||| |||    
T  20928237 taggaaaactgatggcttgaccaaacgctgattcatataaggagagaatattcttcatggcatttgcttgtccctc 20928162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 164 - 572
Target Start/End: Complemental strand, 45011908 - 45011500
Alignment:
Q  164 gtacctgtaataactcctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaacaaatacacgaaaagaggatccccttgtc 263  Q
    |||||||||||||| |||| || ||| ||||| ||||||||  ||||||  ||||  ||||| |||||||| |  |||    |||||||||||| ||| |    
T  45011908 gtacctgtaataacacctcgcgcctccgcatccctaataagggaagataacccttctacacagataataaaaaggtacggagaaagaggatcccattgac 45011809  T
Q  264 gaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataataatccactgactctacacacatacttatctagtgaatccaatg 363  Q
    |||||||||| | || ||| |||||||||||||||||| ||| |||||||||| |||||||||| ||||| |||||||| || ||| | ||||||||       
T  45011808 gaaggccacatcctgggataatagggccaaccttttcattattgacaagaacagaataatccacagactcgacacacatgctcatccattgaatccacct 45011709  T
Q  364 agcattgaaccccattttaaccataacgactctcaagtaatcccaatccatacaatcataagccttaataatatcaagtttcagaacaacatatatgtcc 463  Q
    ||| ||||| |||||||||||||||||  | |  || |||||||||||||||| |||||| |||||  |||||||||| |||| | ||| |||  ||||     
T  45011708 agcgttgaagcccattttaaccataacagcacataaataatcccaatccatacgatcatatgccttgttaatatcaagcttcaaagcaatatacctgtca 45011609  T
Q  464 tcgcctatcgtcttagttttcattaaattaatgacctcgattgcaaccataacattatccataatggacctacccggaatgaaagcagattgattttcag 563  Q
    |||| | ||||||| |||||||| ||||  || ||||| |||||||||||| ||||||||| |||||| ||||| ||||  |||||||||||  | ||||    
T  45011608 tcgcttctcgtcttcgttttcatgaaatggattacctcaattgcaaccatagcattatccaaaatggatctaccgggaacaaaagcagattggctatcag 45011509  T
Q  564 aaatacact 572  Q
    |||||||||    
T  45011508 aaatacact 45011500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 222 - 522
Target Start/End: Complemental strand, 44884255 - 44883955
Alignment:
Q  222 cacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataata 321  Q
    ||||||||||||||||||||  | |||||||||||||||| || || |||| ||  |  || || || ||||||| |||||  |  ||||| ||| ||||    
T  44884255 cacaaataataaacaaatacggggaaagaggatccccttgacgcagaccacgccccggaataatgggaccaacctgttcaccgttaacaagcacagaata 44884156  T
Q  322 atccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatcccaatccatacaatca 421  Q
    ||| || ||||| ||||||||||| ||| | ||||||||| ||  ||| || |||||||||  ||||||  | ||||| || ||||||||||||| ||||    
T  44884155 atcgacagactcgacacacatactcatccaatgaatccaacgattattaaatcccattttattcataacagccctcaaatagtcccaatccatacgatca 44884056  T
Q  422 taagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcgtcttagttttcattaaattaatgacctcgattgcaaccataacattat 521  Q
    || || ||  |||| |||||||||||| |||||||  |||| ||||||  |||||| |||||||| ||||  |  || |||||||| |||||| ||||||    
T  44884055 taggctttgctaatgtcaagtttcagagcaacatacctgtcttcgcctcgcgtcttggttttcataaaatgcaaaacttcgattgcgaccatagcattat 44883956  T
Q  522 c 522  Q
    |    
T  44883955 c 44883955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 361
Target Start/End: Complemental strand, 25102573 - 25102458
Alignment:
Q  246 aaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataataatccactgactctacacacatact 345  Q
    ||||||||||||||||||| || |||| || ||  || |||||||||||||  |||| ||  ||||| ||  ||||||| || ||||||||||||||||     
T  25102573 aaagaggatccccttgtcggagaccacgccctggaataatagggccaacctgctcaccattaacaagcactgaataatcgacagactctacacacatacg 25102474  T
Q  346 tatctagtgaatccaa 361  Q
    |||| | |||||||||    
T  25102473 tatccaatgaatccaa 25102458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 221 - 567
Target Start/End: Original strand, 8864397 - 8864743
Alignment:
Q  221 acacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataat 320  Q
    |||||||| ||||| | ||||  | |||| ||||||||||||| |||||||| || ||  || ||||| || ||||||||| | |  ||||||||| |||    
T  8864397 acacaaatgataaaaagatacggggaaagtggatccccttgtctaaggccacgccctggaataataggtcccaccttttcattgttcacaagaacagaat 8864496  T
Q  321 aatccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatcccaatccatacaatc 420  Q
    ||| ||||||||||||||||||||  ||| ||||||||||   || |||||| ||||| |||||||| |   ||| ||  |||||||| |||||||  ||    
T  8864497 aattcactgactctacacacatacacatccagtgaatccacctagaattgaatcccatcttaaccatcatagctcacatataatcccagtccatacggtc 8864596  T
Q  421 ataagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcgtcttagttttcattaaattaatgacctcgattgcaaccataacatta 520  Q
    ||| |||||| ||||||||||||||| | |||||||  |||| | |||  |||||||||| ||||| || | ||  |||||||| || |||||| | |||    
T  8864597 atatgccttactaatatcaagtttcaaagcaacataactgtcattgcccctcgtcttagtcttcataaagtgaacaacctcgatcgctaccatagcctta 8864696  T
Q  521 tccataatggacctacccggaatgaaagcagattgattttcagaaat 567  Q
    |||| ||||||||||||| |||  |||||||| || || ||||||||    
T  8864697 tccagaatggacctacccagaacaaaagcagaatggttgtcagaaat 8864743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 186 - 522
Target Start/End: Original strand, 17244605 - 17244941
Alignment:
Q  186 tctcggcatctctaataagcaaagatagacctttgacacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgat 285  Q
    |||| ||||||||||| ||| ||||||  ||||   ||||||||||||||||||||  | |||||||||||||||| || || |||| || |   || ||    
T  17244605 tctcagcatctctaatgagcgaagataagccttcatcacaaataataaacaaatacggggaaagaggatccccttgacgcagaccacgccctagaataat 17244704  T
Q  286 agggccaaccttttcactatggacaagaacataataatccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaacc 385  Q
     || ||||||| |||||  |  ||||| ||| ||||||| || ||||| ||||||||||| ||| | |||||||||  |  ||| || |||||||||  |    
T  17244705 gggaccaacctgttcaccgttaacaagcacagaataatcgacagactcgacacacatactcatccaatgaatccaacaattattaaatcccattttattc 17244804  T
Q  386 ataacgactctcaagtaatcccaatccatacaatcataagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcgtcttagttttca 485  Q
    |||||  | ||||| || ||||||||||||| |||||| || ||  |||| ||||||||||||  ||||||  |||| ||||||  |||||| |||||||    
T  17244805 ataacagccctcaaatagtcccaatccatacgatcataggctttgctaatgtcaagtttcagaggaacatacctgtcttcgcctcgcgtcttggttttca 17244904  T
Q  486 ttaaattaatgacctcgattgcaaccataacattatc 522  Q
    | ||||  |  || |||||||| |||||| |||||||    
T  17244905 taaaatgcaaaacttcgattgcgaccatagcattatc 17244941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 30172545 - 30172397
Alignment:
Q  308 acaagaacataataatccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatccc 407  Q
    |||||| || |||||||||||||||||||| ||||||  ||| ||||||||||   || |||||| | ||| |||||||| ||  ||| ||  ||||||     
T  30172545 acaagagcagaataatccactgactctacatacatacacatccagtgaatccacctagaattgaatctcatcttaaccatgacagctcgcatataatcct 30172446  T
Q  408 aatccatacaatcataagccttaataatatcaagtttcagaacaacata 456  Q
    |||||||||  ||||| |||||| ||||||||| ||||| | |||||||    
T  30172445 aatccatacggtcatatgccttactaatatcaaatttcaaagcaacata 30172397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 456
Target Start/End: Original strand, 3207261 - 3207409
Alignment:
Q  308 acaagaacataataatccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatccc 407  Q
    ||||| ||||||||||| ||||| |  ||||||||||  ||| ||||||||||| ||| ||  || |||||||||  || |||  | |||||||||| ||    
T  3207261 acaagcacataataatctactgattgaacacacatacacatccagtgaatccaacgagaatgaaatcccattttatgcaaaacagccctcaagtaattcc 3207360  T
Q  408 aatccatacaatcataagccttaataatatcaagtttcagaacaacata 456  Q
    ||||||||| ||| || || ||| |||| |||||||| ||| |||||||    
T  3207361 aatccatacgatcgtatgctttactaatgtcaagttttagagcaacata 3207409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 186 - 491
Target Start/End: Original strand, 29338020 - 29338325
Alignment:
Q  186 tctcggcatctctaataagcaaagatagacctttgacacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgat 285  Q
    |||| ||||||||||| ||| ||||||  ||||   ||||||||||||||||||||  | |||||||||||||||| || || |||| ||  |  || ||    
T  29338020 tctcagcatctctaatgagcgaagataatccttcagcacaaataataaacaaatacggggaaagaggatccccttgacgcagaccacgccccggaataat 29338119  T
Q  286 agggccaaccttttcactatggacaagaacataataatccactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaacc 385  Q
     || ||||| | |||||  |  ||||| ||| ||||||| || ||||| ||||||||||| ||| | ||||||||| ||  ||| || |||||||||  |    
T  29338120 gggaccaacatgttcaccgttaacaagcacaaaataatcgacagactcgacacacatactcatccaatgaatccaacgattattaaatcccattttattc 29338219  T
Q  386 ataacgactctcaagtaatcccaatccatacaatcataagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcgtcttagttttca 485  Q
    |||||  | ||||| || ||||||||||||| |||||| || ||  |||| |||||||||||| |||||||  |||| |||| |  |||||| |||||||    
T  29338220 ataacagccctcaaatagtcccaatccatacgatcataggctttgctaatgtcaagtttcagagcaacatacctgtcttcgcgtcgcgtcttggttttca 29338319  T
Q  486 ttaaat 491  Q
    | ||||    
T  29338320 taaaat 29338325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 14503742 - 14503684
Alignment:
Q  179 cctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaacaa 237  Q
    ||||| |||||||||||||| |||||| |||||| |||||   ||||||||||||||||    
T  14503742 cctcttgtctcggcatctctgataagcgaagataaaccttctgcacaaataataaacaa 14503684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 344
Target Start/End: Complemental strand, 5880 - 5758
Alignment:
Q  222 cacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataata 321  Q
    |||| ||||||||||||||   | ||||||||||||||||||| || ||||||| ||  || |||||||||||||  |||| || |||||| |||   ||    
T  5880 cacatataataaacaaatagggggaaagaggatccccttgtcggagaccacaccctggaataatagggccaacctgctcaccattgacaagcacagtgta 5781  T
Q  322 atccactgactctacacacatac 344  Q
    |||  ||||||||||||||||||    
T  5780 atcgtctgactctacacacatac 5758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 22290397 - 22290309
Alignment:
Q  179 cctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaacaaatacacgaaaagaggatccccttgtcgaag 267  Q
    ||||| |||||||||||||| |||||| |||||| |||||  ||||||||||||||||| |||    | |||||||||||||| |||||    
T  22290397 cctcttgtctcggcatctctgataagcgaagataaaccttctacacaaataataaacaagtacggagagagaggatccccttgacgaag 22290309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 10727348 - 10727306
Alignment:
Q  221 acacaaataataaacaaatacacgaaaagaggatccccttgtc 263  Q
    |||||||||||||||||||| | | ||||||||||||||||||    
T  10727348 acacaaataataaacaaatagagggaaagaggatccccttgtc 10727306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 17784835 - 17784777
Alignment:
Q  179 cctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaacaa 237  Q
    ||||| |||||||||||||| |||||| |||||| |||||  |||||||||||||||||    
T  17784835 cctcttgtctcggcatctctgataagcgaagataaaccttctacacaaataataaacaa 17784777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 19086354 - 19086296
Alignment:
Q  179 cctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaacaa 237  Q
    ||||| |||||||||||||| |||||| |||||| |||||  |||||||||||||||||    
T  19086354 cctcttgtctcggcatctctgataagcgaagataaaccttctacacaaataataaacaa 19086296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 627
Target Start/End: Original strand, 16747076 - 16747173
Alignment:
Q  530 gacctacccggaatgaaagcagattgattttcagaaatacactaagacaagactcctttcagcctattcgctaacaccttagagataagcttataaag 627  Q
    ||||| ||||||| ||||||||||||||| || |||||||| | |||||||||  | |||| ||| || ||||||||||| || ||||  ||||||||    
T  16747076 gaccttcccggaacgaaagcagattgattgtcggaaatacattgagacaagaccaccttcaacctgtttgctaacaccttcgaaataattttataaag 16747173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 16746767 - 16746889
Alignment:
Q  222 cacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccaca-ccttgagatgatagggccaaccttttcactatggacaagaacataat 320  Q
    |||| |||||||||||||||    |||||||||||||||| ||||||||||| ||  | ||| ||||| ||||||| ||||| ||  ||||| ||| | |    
T  16746767 cacagataataaacaaatacgaagaaagaggatccccttggcgaaggccacaccccggngataataggaccaacctgttcaccattaacaagtacagagt 16746866  T
Q  321 aatccactgactctacacacata 343  Q
    ||||||| || || |||||||||    
T  16746867 aatccaccgattcaacacacata 16746889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 361
Target Start/End: Original strand, 31663102 - 31663241
Alignment:
Q  222 cacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataata 321  Q
    |||| ||||||||||||||   | |||||||||||||| || | || |||| || ||  || ||||||| |||||  |||| ||  ||||| ||  ||||    
T  31663102 cacatataataaacaaatagggggaaagaggatcccctagtaggagaccacgccctggaataatagggcgaacctgctcaccattaacaagcactgaata 31663201  T
Q  322 atccactgactctacacacatacttatctagtgaatccaa 361  Q
    ||| || |||||||||||||||| |||| |||||||||||    
T  31663202 atcgacggactctacacacatacgtatccagtgaatccaa 31663241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 31933294 - 31933155
Alignment:
Q  222 cacaaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataata 321  Q
    |||| ||||||||||||||   | |||||||||||||| || | || |||| || ||  || ||||||| |||||  |||| ||  ||||| ||  ||||    
T  31933294 cacatataataaacaaatagggggaaagaggatcccctagtaggagaccacgccctggaataatagggctaacctgctcaccattaacaagcactgaata 31933195  T
Q  322 atccactgactctacacacatacttatctagtgaatccaa 361  Q
    ||| || |||||||||||||||| |||| |||||||||||    
T  31933194 atcgacggactctacacacatacgtatccagtgaatccaa 31933155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 361
Target Start/End: Complemental strand, 31952599 - 31952488
Alignment:
Q  250 aggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataataatccactgactctacacacatacttatc 349  Q
    ||||||||||||||| || |||| || ||  || |||||||||||||  || | ||  ||||| ||  ||||||| || |||||||||||||||| ||||    
T  31952599 aggatccccttgtcggagaccacgccctggaataatagggccaacctgctcgccattaacaagcactgaataatcgacggactctacacacatacgtatc 31952500  T
Q  350 tagtgaatccaa 361  Q
     |||||||||||    
T  31952499 cagtgaatccaa 31952488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 6008154 - 6008212
Alignment:
Q  179 cctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaacaa 237  Q
    ||||| |||||||||||||| |||||| |||||| |||||   ||||||||||||||||    
T  6008154 cctcttgtctcggcatctctgataagcgaagataaaccttctgcacaaataataaacaa 6008212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 567
Target Start/End: Complemental strand, 49640427 - 49640234
Alignment:
Q  374 cccattttaaccataacgactctcaagtaatcccaatccatacaatcataagccttaataatatcaagtttcagaacaacatatatgtcctcgcctatcg 473  Q
    |||||||||  ||||||  | ||||| || |||||| |||| | |||||| || ||  |||| |||||||||||| |||||||  |||| ||||||  ||    
T  49640427 cccattttattcataacagccctcaaatagtcccaacccatgcgatcataggctttgctaatgtcaagtttcagagcaacatacctgtcttcgcctcgcg 49640328  T
Q  474 tcttagttttcattaaattaatgacctcgattgcaaccataacattatccataatggacctacccggaatgaaagcagattgattttcagaaat 567  Q
    ||||  ||||||| ||||  |  || |||||| | |||||| ||||||| |  || ||||| |||||||  ||||||||||| || ||||||||    
T  49640327 tcttgattttcataaaatgcaaaacttcgattacgaccatagcattatctaggatagacctccccggaacaaaagcagattggttatcagaaat 49640234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 465
Target Start/End: Complemental strand, 36788451 - 36788387
Alignment:
Q  401 taatcccaatccatacaatcataagccttaataatatcaagtttcagaacaacatatatgtcctc 465  Q
    |||||||||||||| |  |||||||| ||| ||||||| ||||||| | ||||||| ||||||||    
T  36788451 taatcccaatccattcggtcataagctttactaatatctagtttcaaagcaacatacatgtcctc 36788387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 448
Target Start/End: Original strand, 188646 - 188869
Alignment:
Q  225 aaataataaacaaatacacgaaaagaggatccccttgtcgaaggccacaccttgagatgatagggccaaccttttcactatggacaagaacataataatc 324  Q
    |||||||||||||||||    |||||||||||||||| || || |||| ||  |  || || || ||||||| |||||  |  ||||| ||| |||||||    
T  188646 aaataataaacaaatacgaagaaagaggatccccttgacgcagaccacgccccggaataatgggaccaacctgttcaccgttaacaagcacagaataatc 188745  T
Q  325 cactgactctacacacatacttatctagtgaatccaatgagcattgaaccccattttaaccataacgactctcaagtaatcccaatccatacaatcataa 424  Q
     || ||||| | ||||||||| ||| | ||||||||| ||  ||| || |||||||||  |||||| || || || || ||||||||||||  ||||||     
T  188746 gacagactcgatacacatactcatccaatgaatccaacgattattaaatcccattttattcataacaacccttaaatagtcccaatccatatgatcatag 188845  T
Q  425 gccttaataatatcaagtttcaga 448  Q
    || ||  |||| ||||||||||||    
T  188846 gcttttctaatgtcaagtttcaga 188869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 30857383 - 30857325
Alignment:
Q  179 cctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaacaa 237  Q
    ||||| |||||||||||||| |||||| |||||| |||||   ||||||||||||||||    
T  30857383 cctcttgtctcggcatctctgataagcgaagataaaccttctgcacaaataataaacaa 30857325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 27012069 - 27012122
Alignment:
Q  401 taatcccaatccatacaatcataagccttaataatatcaagtttcagaacaaca 454  Q
    |||||||||||||| | ||||||||||||  ||||||||||||| ||| |||||    
T  27012069 taatcccaatccattctatcataagccttgctaatatcaagtttaagagcaaca 27012122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 55225633 - 55225576
Alignment:
Q  179 cctctcgtctcggcatctctaataagcaaagatagacctttgacacaaataataaaca 236  Q
    ||||| |||||||||||||| |||||| |||||| |||||   |||||||||||||||    
T  55225633 cctcttgtctcggcatctctgataagcgaagataaaccttctgcacaaataataaaca 55225576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 7716 - 7663
Alignment:
Q  401 taatcccaatccatacaatcataagccttaataatatcaagtttcagaacaaca 454  Q
    |||||||||||||| | ||||||||||||  ||||||||||||| ||| |||||    
T  7716 taatcccaatccattctatcataagccttgctaatatcaagtttaagagcaaca 7663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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