View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10985_low_1 (Length: 675)
Name: NF10985_low_1
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10985_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Original strand, 13656704 - 13657355
Alignment:
| Q |
18 |
attgtagacctaaaatctgcaaacaggaattaggtccaccaacaaacataaactataataaaaggtgaatcataaataggggtaactatgtaatgttatg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656704 |
attgtagacctaaaatctgcaaacaggaattatgtccaccaacaaacataaactataataaaaggtgaatcataaataggggtaactatgtaatgttatg |
13656803 |
T |
|
| Q |
118 |
tgactttttagggtggtggtggtgacattgaaagtggaaaccaatgtgttgatataggagaaaaatagtgtttttcgttattttagttttcctattcatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656804 |
tgactttttagggtggtggtggtgacattgaaagtggaaaccaatgtgttgatataggagaaaaatagtgtttttcgttattttagttttcctattcatg |
13656903 |
T |
|
| Q |
218 |
atggtttgaatgaattttacaatgcatgagattggtcatccaaaataagatgatagtgttcaagcatgcatggttttgcagcaatggtacacgacacaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13656904 |
atggtttgaatgaattttacaatgcatgagattggtaatccaaaataagatgatagtgttcaagcatgcatggtattgcagcaatggtacacgacacaaa |
13657003 |
T |
|
| Q |
318 |
gtggtggacatgttgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaag |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13657004 |
gtggtggacatgttgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaag |
13657103 |
T |
|
| Q |
418 |
gttaccaaagcctctgatttagatctaccaacaaaaattatttttcattaaattttacaaacaataattctaac---nnnnnnnggctaatgtattgaat |
514 |
Q |
| |
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|| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |
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| T |
13657104 |
gtcaccaaagtctctgatttagatctaccaacagaaattatttttcattagattttacaaacaataattctaacaaaaaaaaaaggctcatatattgaat |
13657203 |
T |
|
| Q |
515 |
cttactttaggcatcacttacttttaataaaatttgggttggctctgccccatactcagatgatatttatgacttcaaaataaaaagacggacgagccaa |
614 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13657204 |
tttactttaagcatcacttacttttaataaaatttgggttggctctgccccatacacagatgatatttatgactttaaaataaaaagacggacgagccaa |
13657303 |
T |
|
| Q |
615 |
acttaaaattgtatttttagatgtcttctttcttctaagttcatgttcttct |
666 |
Q |
| |
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|| ||||||||||| | | || ||||||||||||||| ||||||||||||| |
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| T |
13657304 |
acataaaattgtatatctggacatcttctttcttctaacttcatgttcttct |
13657355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Original strand, 13715346 - 13715997
Alignment:
| Q |
18 |
attgtagacctaaaatctgcaaacaggaattaggtccaccaacaaacataaactataataaaaggtgaatcataaataggggtaactatgtaatgttatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13715346 |
attgtagacctaaaatctgcaaacaggaattatgtccaccaacaaacataaactataataaaaggtgaatcataaataggggtaactatgtaatgttatg |
13715445 |
T |
|
| Q |
118 |
tgactttttagggtggtggtggtgacattgaaagtggaaaccaatgtgttgatataggagaaaaatagtgtttttcgttattttagttttcctattcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715446 |
tgactttttagggtggtggtggtgacattgaaagtggaaaccaatgtgttgatataggagaaaaatagtgtttttcgttattttagttttcctattcatg |
13715545 |
T |
|
| Q |
218 |
atggtttgaatgaattttacaatgcatgagattggtcatccaaaataagatgatagtgttcaagcatgcatggttttgcagcaatggtacacgacacaaa |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13715546 |
atggtttgaatgaattttacaatgcatgagattggtaatccaaaataagatgatagtgttcaagcatgcatggtattgcagcaatggtacacgacacaaa |
13715645 |
T |
|
| Q |
318 |
gtggtggacatgttgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaag |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13715646 |
gtggtggacatgttgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaag |
13715745 |
T |
|
| Q |
418 |
gttaccaaagcctctgatttagatctaccaacaaaaattatttttcattaaattttacaaacaataattctaac---nnnnnnnggctaatgtattgaat |
514 |
Q |
| |
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|| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |
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| T |
13715746 |
gtcaccaaagtctctgatttagatctaccaacagaaattatttttcattagattttacaaacaataattctaacaaaaaaaaaaggctcatatattgaat |
13715845 |
T |
|
| Q |
515 |
cttactttaggcatcacttacttttaataaaatttgggttggctctgccccatactcagatgatatttatgacttcaaaataaaaagacggacgagccaa |
614 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13715846 |
tttactttaagcatcacttacttttaataaaatttgggttggctctgccccatacacagatgatatttatgactttaaaataaaaagacggacgagccaa |
13715945 |
T |
|
| Q |
615 |
acttaaaattgtatttttagatgtcttctttcttctaagttcatgttcttct |
666 |
Q |
| |
|
|| ||||||||||| | | || ||||||||||||||| ||||||||||||| |
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|
| T |
13715946 |
acataaaattgtatatctggacatcttctttcttctaacttcatgttcttct |
13715997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 474
Target Start/End: Complemental strand, 26765191 - 26765152
Alignment:
| Q |
435 |
tttagatctaccaacaaaaattatttttcattaaatttta |
474 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||| |
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| T |
26765191 |
tttagacccaccaacaaaaattatttttcattaaatttta |
26765152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 481
Target Start/End: Original strand, 18732314 - 18732352
Alignment:
| Q |
444 |
accaacaaaa-attatttttcattaaattttacaaacaa |
481 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
18732314 |
accaacaaaacattatttttcattaaattttacaaacaa |
18732352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Complemental strand, 41872461 - 41872428
Alignment:
| Q |
448 |
acaaaaattatttttcattaaattttacaaacaa |
481 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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|
| T |
41872461 |
acaaaaattatttttcattaaattttataaacaa |
41872428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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